PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000080.1_g090.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 996aa MW: 110841 Da PI: 5.7008

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000080.1_g090.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.3	1.8e-10	839	885	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRd++N++f eL ++l + + +K +Ka+iL Av+ + +L Cse_sc000080.1_g090.1 839 KACREKMRRDKLNEKFVELASILEPG---RPPKIDKAAILVDAVRMVTQL 885 678********************8...89************99988 PP

Sequence ? help Back to Top
Protein Sequence Length: 996 aa Download sequence
MVGTANGSRT PVTPRQAFSI VNGSGGGVQV DPPGLRSGPG SIAGSDCGGG GVGNGFEFTK 60 EDVDALLNMK IRTKDKFNLK EKCELQMEYI KKLRMCVRFF QEFEGDLSLE HEKLIKMFEA 120 AEKKSNELEM QMNAKEEELN SIIAELQTHN ADLQEKFMKE EAEKLAAVET LMTEKDARLS 180 AERSQASLSE DLEKALREGS SANQKIISLN DMYKRLQEYN TSLQQYNSKL QTELNQTSET 240 LSKVEREKAA LMEDLSKLRG YHDSQQDQLA STKASLEETT KLKDALANEV GYLRVDLHQV 300 RDDRDRQLSL VQDLTAEVAQ YKECTGKSAA ELGTLTSRSI ELEATCALQT DTIIRLQDQL 360 ATAEKKLEIS DLSSVETRTG YEEQKKLNAE LQIRLAEAEA KVIDGEVLRK KLHNTIQELK 420 GNIRVFCRVR PLLSDEGAES ETKSITFPTT TEALGRGIEV VQHGQPIPFM FDKVFMPQSS 480 QEEMFTEVSQ LVQSALDGYK VCIFAYGQTG SGKTHTMMGT PGSYDDKGLI PRSLEQIFEA 540 RQKLKEQGWK YEMQVSMLEI YNETIRDLLS SNKSTSTESS GNKQQYAIKH DANGNTHVSD 600 LTIVDVRSSK EVSFLLNRAA QSRSVGRTQM NEQSSRSHFV FTLRISGVNE TMEQQVQGIL 660 NLIDLAGSER LSKSGSTGDR LRETQAINKS LSSLSDVIFA LAKKEEHIPF RNSKLTYLLQ 720 PCLGGDSKTL MVVNVSPAPS SVNESLCSLR FAARVNACEI SIPRQAMVSP ENTNWIYEYG 780 LIEDVSGFNC WPPTFNNASS SNHPPSAELD GSIVDSDGHN ESRSKKRGRA ESCTGTSNKA 840 CREKMRRDKL NEKFVELASI LEPGRPPKID KAAILVDAVR MVTQLRKEAQ KLKDSSSDLQ 900 EKIKELKAEK NELRDEKQRL KMEKEKLEQQ VNTMNVQPTF MAPPPAIPAA YAAAQGQALG 960 NKLVPVISYP GMAMWQFMPP ASVDTSQDHV LHPPVA

Sequence ? help Back to Top

Protein Sequence Length: 996 aa Download sequence

MVGTANGSRT PVTPRQAFSI VNGSGGGVQV DPPGLRSGPG SIAGSDCGGG GVGNGFEFTK  60
EDVDALLNMK IRTKDKFNLK EKCELQMEYI KKLRMCVRFF QEFEGDLSLE HEKLIKMFEA  120
AEKKSNELEM QMNAKEEELN SIIAELQTHN ADLQEKFMKE EAEKLAAVET LMTEKDARLS  180
AERSQASLSE DLEKALREGS SANQKIISLN DMYKRLQEYN TSLQQYNSKL QTELNQTSET  240
LSKVEREKAA LMEDLSKLRG YHDSQQDQLA STKASLEETT KLKDALANEV GYLRVDLHQV  300
RDDRDRQLSL VQDLTAEVAQ YKECTGKSAA ELGTLTSRSI ELEATCALQT DTIIRLQDQL  360
ATAEKKLEIS DLSSVETRTG YEEQKKLNAE LQIRLAEAEA KVIDGEVLRK KLHNTIQELK  420
GNIRVFCRVR PLLSDEGAES ETKSITFPTT TEALGRGIEV VQHGQPIPFM FDKVFMPQSS  480
QEEMFTEVSQ LVQSALDGYK VCIFAYGQTG SGKTHTMMGT PGSYDDKGLI PRSLEQIFEA  540
RQKLKEQGWK YEMQVSMLEI YNETIRDLLS SNKSTSTESS GNKQQYAIKH DANGNTHVSD  600
LTIVDVRSSK EVSFLLNRAA QSRSVGRTQM NEQSSRSHFV FTLRISGVNE TMEQQVQGIL  660
NLIDLAGSER LSKSGSTGDR LRETQAINKS LSSLSDVIFA LAKKEEHIPF RNSKLTYLLQ  720
PCLGGDSKTL MVVNVSPAPS SVNESLCSLR FAARVNACEI SIPRQAMVSP ENTNWIYEYG  780
LIEDVSGFNC WPPTFNNASS SNHPPSAELD GSIVDSDGHN ESRSKKRGRA ESCTGTSNKA  840
CREKMRRDKL NEKFVELASI LEPGRPPKID KAAILVDAVR MVTQLRKEAQ KLKDSSSDLQ  900
EKIKELKAEK NELRDEKQRL KMEKEKLEQQ VNTMNVQPTF MAPPPAIPAA YAAAQGQALG  960
NKLVPVISYP GMAMWQFMPP ASVDTSQDHV LHPPVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G54680.1	3e-92	bHLH family protein