PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000077.1_g110.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 694aa MW: 77243.9 Da PI: 8.7416

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000077.1_g110.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.7	1.1e-17	383	430	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+++ +G g+W++ ++ g+ R++k+c++rw +yl Cse_sc000077.1_g110.1 383 KGAWTPEEDQILIDYIQAHGHGSWSALPKLAGLQRCGKSCRLRWTNYL 430 79********************************************97 PP
2	Myb_DNA-binding	53.6	5.3e-17	436	481	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++++++++ lG++ W+tIa +++ gRt++++k++w++++ Cse_sc000077.1_g110.1 436 RGKFSKEEEDIILHLHSVLGNK-WSTIATRLP-GRTDNEIKNYWNTHM 481 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence
MDDVWIENKY MEKGDELCKA SSSGAKGSTA MILDKFTSEL VSLFEISPPI PASSLLVRHR 60 ISTYDYTKNT KMLFYPLGCL AKQISFNRTT VAPLERLKLE YMVRGEQKNL FELIKFIASS 120 QGLRGFWKGN FVNILRTAPF KALNFCAYDS YRKQLLRLTG NEETTNFERL FAGAGAGMTA 180 SILCLPLDTI RTKLVAPGGE SLGGVIGAFR HIIQTEGFFS LYKGLVPSIL SMAPASAVFY 240 GVYDILKSAY LNSPEGKQRI KYMNRQGEDL NILQQLELGP VRTLLHGAIA GACAEVATYP 300 FEVVRRQLQL QVRANKMSAL ATFSKIVDNG GVSALYAGLI PSLLQVLPSA AISYFVYEFM 360 KIVLKVECPT PTSRDDENNI LKKGAWTPEE DQILIDYIQA HGHGSWSALP KLAGLQRCGK 420 SCRLRWTNYL RPDIKRGKFS KEEEDIILHL HSVLGNKWST IATRLPGRTD NEIKNYWNTH 480 MKKKLLHMGI DPMTHQPRTD LYSWLPQLLA LANIKELLEQ SQLAQNLQYF NLLLQKKAGL 540 STLLNRTDSI PQMQEETPSF ANDFQLALYQ ESEEMTQFLG LNSSVTQPLH EVSIMNLQTT 600 NDHEVVGHEQ GKARLTSVNS SSSLSSSMTN WTSMPPLIDS TTPTTTLTIN GGSLDSGSAI 660 GYGGGLPSSS TRVLPSAAIS YFVYEFMKIV LKVE

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence

MDDVWIENKY MEKGDELCKA SSSGAKGSTA MILDKFTSEL VSLFEISPPI PASSLLVRHR  60
ISTYDYTKNT KMLFYPLGCL AKQISFNRTT VAPLERLKLE YMVRGEQKNL FELIKFIASS  120
QGLRGFWKGN FVNILRTAPF KALNFCAYDS YRKQLLRLTG NEETTNFERL FAGAGAGMTA  180
SILCLPLDTI RTKLVAPGGE SLGGVIGAFR HIIQTEGFFS LYKGLVPSIL SMAPASAVFY  240
GVYDILKSAY LNSPEGKQRI KYMNRQGEDL NILQQLELGP VRTLLHGAIA GACAEVATYP  300
FEVVRRQLQL QVRANKMSAL ATFSKIVDNG GVSALYAGLI PSLLQVLPSA AISYFVYEFM  360
KIVLKVECPT PTSRDDENNI LKKGAWTPEE DQILIDYIQA HGHGSWSALP KLAGLQRCGK  420
SCRLRWTNYL RPDIKRGKFS KEEEDIILHL HSVLGNKWST IATRLPGRTD NEIKNYWNTH  480
MKKKLLHMGI DPMTHQPRTD LYSWLPQLLA LANIKELLEQ SQLAQNLQYF NLLLQKKAGL  540
STLLNRTDSI PQMQEETPSF ANDFQLALYQ ESEEMTQFLG LNSSVTQPLH EVSIMNLQTT  600
NDHEVVGHEQ GKARLTSVNS SSSLSSSMTN WTSMPPLIDS TTPTTTLTIN GGSLDSGSAI  660
GYGGGLPSSS TRVLPSAAIS YFVYEFMKIV LKVE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	6e-82	MYB family protein