PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc000059.1_g080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 170aa MW: 19251.1 Da PI: 8.4845 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 75.6 | 3.9e-24 | 10 | 56 | 2 | 48 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 i++ks rqvtfskRr+g++KKA LSvLCd+++av++fs +gkly Cse_sc000059.1_g080.1 10 LIQDKSSRQVTFSKRRTGLMKKARQLSVLCDVDIAVLVFSAQGKLYQ 56 699******************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence |
MGRRKLEMKL IQDKSSRQVT FSKRRTGLMK KARQLSVLCD VDIAVLVFSA QGKLYQSCNG 60 TTNSVEHILS RYERSCTEVG ERTNNGAGGQ LEVLSQCTKF RTCRELLQTV DRLVEENNSE 120 ELSVTDMTEL ELELDAALVQ TRLRKVIVRR YLFNSVSLAV IYCSICSESS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65050.2 | 1e-32 | MIKC_MADS family protein |