PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc000044.1_g120.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family ARF
Protein Properties Length: 609aa    MW: 67532.1 Da    PI: 7.9005
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc000044.1_g120.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.17.9e-24153254199
                            EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                            f+k+lt sd++++g +++p++ ae++      ++++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L  gD v+F 
  Cse_sc000044.1_g120.1 153 FCKTLTASDTSTHGGFSVPRRAAEDCfppldYKQPRPSQELVAKDLHGTEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVCGDAVLFL 240
                            99****************************945566778************************************************* PP

                            E-SSSEE..EEEEE-S CS
                     B3  84 ldgrsefelvvkvfrk 99 
                              + +++ l+++++r+
  Cse_sc000044.1_g120.1 241 --RGDDGVLRLGIRRA 254
                            ..34788899999997 PP
2Auxin_resp109.53.4e-36279360182
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                            +++++s++s+F+v+YnPr ++seF+v++++++k++++++s+GmRfkm++e+ed   rr +G+++g++d+d++rWp+SkWr+L
  Cse_sc000044.1_g120.1 279 VVNSISQRSPFSVCYNPRGGSSEFIVPYNRFLKSFSCSFSPGMRFKMRVESEDGGDRRSTGIITGLNDIDSSRWPGSKWRCL 360
                            6899*****************************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    
MMCGLIDLNI GNYDTDEVST SSSSSGSAPA SLVGSGDTPV VCCLELWHAC AGPLISLPKK  60
GNAVVYCPQG HLEQLQFAGE FRTSGEFSIA PHVFCRVVDV KLHAEAGNDD VYAQVSLIQD  120
PQLEQKWREG ARGAEYADDD TGVAEKSTTP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP  180
PLDYKQPRPS QELVAKDLHG TEWKFRHIYR GQPRRHLLTT GWSAFVNKKK LVCGDAVLFL  240
RGDDGVLRLG IRRASQVKVA ANLPSFCSQQ LNYFDFSSVV NSISQRSPFS VCYNPRGGSS  300
EFIVPYNRFL KSFSCSFSPG MRFKMRVESE DGGDRRSTGI ITGLNDIDSS RWPGSKWRCL  360
MVRWDCMEVT KQTRVSPWEI ERCGSVSEVE SFVSPLTKRS RTGFPPILKD RTSGASDFGE  420
SMRFHKVLQG QEIYGFHRPP NINVLSNDIR NQTSVGFGES LGFNRVLQGQ EIMSNFQYGE  480
RLPNFGNLFS SPSSVLRFPQ TMSQAANAYP IRYADNMKLL SDQNHPGFFT PLRMQQEEPV  540
LKSTNSCRLF GFSLTEGSNG TQCPSGPAVN TKVGGSCTNE RVHQWYRPSD GFLQGLCQWR  600
CVVAEVAGC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.10.0ARF family protein