PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc000017.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

SBP

Protein Properties

Length: 394aa MW: 44029.7 Da PI: 6.9604

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc000017.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	95.7	4.2e-30	110	185	2	76
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEE.E-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqr.fCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 Cqv+gC++ l ++k+yh+rhkvCe hsk+++v+v+g++ rfh lsefD++krsCr+rLa+hnerrrk Cse_sc000017.1_g020.1 110 CQVHGCSKSLVSCKDYHKRHKVCELHSKTAKVIVNGIKGHiLVFLTVRFHLLSEFDDGKRSCRKRLADHNERRRKL 185 **********************************98661567889*************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MESWTFDSAS NMDFMSQNAI QGLEEMCFPQ VVGNSLFANH NAFSEDHNMS FKLSNSVVES 60 DYRDYSGLFD LNLEKNVHQE NSKVTNSPFE VSLPSKQTRM GGSVSRSLFC QVHGCSKSLV 120 SCKDYHKRHK VCELHSKTAK VIVNGIKGHI LVFLTVRFHL LSEFDDGKRS CRKRLADHNE 180 RRRKLHMGRN GRLLPSYSII KDASKFKGST RATSSSMCQI KLEDEMASSI TDVQLQSESR 240 SSCNSELQYL FGVSNYVFSP FNNNEQTSED TIVNILPFSF STVLIIRLLG GTAEVITMDH 300 TPACSLLSSQ SQDASSCHSS INPMMIPLSH NAHLASTVSS NMNPLVNSEQ VNPASRVLCG 360 EGSTIDLLQL SSELERVEHQ KEISHMKCTE WCLC

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MESWTFDSAS NMDFMSQNAI QGLEEMCFPQ VVGNSLFANH NAFSEDHNMS FKLSNSVVES  60
DYRDYSGLFD LNLEKNVHQE NSKVTNSPFE VSLPSKQTRM GGSVSRSLFC QVHGCSKSLV  120
SCKDYHKRHK VCELHSKTAK VIVNGIKGHI LVFLTVRFHL LSEFDDGKRS CRKRLADHNE  180
RRRKLHMGRN GRLLPSYSII KDASKFKGST RATSSSMCQI KLEDEMASSI TDVQLQSESR  240
SSCNSELQYL FGVSNYVFSP FNNNEQTSED TIVNILPFSF STVLIIRLLG GTAEVITMDH  300
TPACSLLSSQ SQDASSCHSS INPMMIPLSH NAHLASTVSS NMNPLVNSEQ VNPASRVLCG  360
EGSTIDLLQL SSELERVEHQ KEISHMKCTE WCLC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	181	207	RRRKLHMGRNGRLLPSYSIIKDASKFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	9e-33	SBP family protein