PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc000001.1_g250.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 547aa    MW: 61217.9 Da    PI: 6.9754
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc000001.1_g250.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS294.62.6e-901875463374
                   GRAS   3 elLlecAeavssgdlelaqalLarlsel.....aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                            ++L+++ e + sg+++ aq +Larl+++     + p+++p+qR  +yf+eAL++++a    ++++++p+    ++n   ++ a+kl+s
  Cse_sc000001.1_g250.1 187 DQLYAASELMLSGNFSHAQGILARLNHHlpspiSPPHKNPIQRSGFYFKEALQRQMAF---GMSNSIPT----PSNGMLKMCAYKLLS 267
                            68999**********************99877677889*******************8...55554443....445788999****** PP

                   GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfA 169
                            evsPi++f ++t Nq++leav  ++ +HiiDfdi+ G+QW++++q+L  ++    +g  sl+iT+++sp++++  el  ++e+L++fA
  Cse_sc000001.1_g250.1 268 EVSPIIQFMNFTSNQTLLEAVGDSDYIHIIDFDIGFGAQWASFIQELPRKKnnnvNGGCSLKITAFASPSTHHPVELGLMHENLSQFA 355
                            ************************************************77767777789***************************** PP

                   GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                            +e+g+ fe +v+   +++++++++++v+ +Ea+aVn+ +    +l    +  s+++++L+++k+lsP+vvv  ++ +++++ sF++ +
  Cse_sc000001.1_g250.1 356 QEIGIAFELEVV---NFDSFDPNSFSVSGNEAVAVNFPIWS--TL----THLSAIPSLLHFIKQLSPRVVVSLDHGCERTDLSFAQCL 434
                            ***********8...9*********************9933..33....22334667******************************* PP

                   GRAS 258 lealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                            l+ l+yy +l+ds+ +ak+    ++ +k+E++ll+++i++++  + +      e + +W+  ++++G++pv ls++ ++qa+++++++
  Cse_sc000001.1_g250.1 435 LNGLQYYEVLLDSIdAAKV--PLHTTNKIEKFLLQPQIESMLIGKLKC----PEPMPHWKTLFTASGYSPVVLSSFSEAQADCVVKRT 516
                            **************55555..4578899**************998887....9*********************************** PP

                   GRAS 345 ksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                            +++g++ve+++ slvl+W++r+L+++SaW+
  Cse_sc000001.1_g250.1 517 QVRGFHVEKRHTSLVLCWQNRELMTASAWK 546
                            *****************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    
MRGMAAHEVA PFTQPLIPHW KQVNHSNNEP ISVLDSRRSP SPSTSTSTLS SSRIHHEMPN  60
LVPKDEWSEL QPIPALVELQ RSSSKIFGGV GLDDWERLLA DSCGGLQVPW ISGDVNNQFD  120
QNPQFPQPVI RKPPAFDRSH EYLLEKQNQQ LSLHQQKSMM AAMVKQEPPT PGPQLSHNHH  180
QKQLICDQLY AASELMLSGN FSHAQGILAR LNHHLPSPIS PPHKNPIQRS GFYFKEALQR  240
QMAFGMSNSI PTPSNGMLKM CAYKLLSEVS PIIQFMNFTS NQTLLEAVGD SDYIHIIDFD  300
IGFGAQWASF IQELPRKKNN NVNGGCSLKI TAFASPSTHH PVELGLMHEN LSQFAQEIGI  360
AFELEVVNFD SFDPNSFSVS GNEAVAVNFP IWSTLTHLSA IPSLLHFIKQ LSPRVVVSLD  420
HGCERTDLSF AQCLLNGLQY YEVLLDSIDA AKVPLHTTNK IEKFLLQPQI ESMLIGKLKC  480
PEPMPHWKTL FTASGYSPVV LSSFSEAQAD CVVKRTQVRG FHVEKRHTSL VLCWQNRELM  540
TASAWKC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-101GRAS family protein