PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.4_1s0081.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

GATA

Protein Properties

Length: 1051aa MW: 112884 Da PI: 8.5713

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.4_1s0081.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	42.8	7e-14	173	206	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +Cg ++p WRrgp +++LCnaCG+++ kg Bobra.4_1s0081.1.p 173 CDHCGRRNSPAWRRGPADKPHLCNACGVRFLGKG 206 9*************99999******97766 PP

Sequence ? help Back to Top
Protein Sequence Length: 1051 aa Download sequence
MAAQSTLQNR KSSQMLIRVI SSSPCCLQRL MVHFIKQQNE QGPLGLREVA TGKSKHTDLT 60 CQVWRSPRSP VAVAQGTNNG FGQLELGFIS ATKGTAKTLS SPASIAGDDA KRSLGRTTGE 120 TERATPAHSD PTDEHCTSGQ AGRGSQLNRK RRRKETPICI LHSTGGASAG GACDHCGRRN 180 SPAWRRGPAD KPHLCNACGV RFLGKGTLEG YMPGMKQRED FKLPDDNLCG ALDEEGGDDT 240 DSAKTTMPQL SGKTRCRSQR TPRRNTTPRS DMVSGPPAVA DAESDDGRAA SCYSCWADCV 300 RMALSHHPGN ARKVVSFLEN ACGLAMAEPL SSPHFLAELN RVRDLYWMDK NRAMDALKHL 360 LEDEAALTLS GAEALLTLSG ASPMPDDRKR DALCSTEDVN SRDSSWAVCE ECGRARETVC 420 WLPVWWRYLC GDQDYSKNPE LTCKDVGDFV APRGLPRSEV SPVIRRGIRG QGPQNRFLPA 480 SVGRSNARRT SGVADMSTEG FKVVDNPVYD GYGSPKSPRH KPFTGLRSSF TDSLSASDFE 540 FLRWLPQGWR MDFGWQRLGE PGRVSPAGLN YFAPDGSGPY QSQEDVLARI AAQPSFRPPQ 600 PGATAATFTP GPAFHRSPSG SVLVSMCGGA VSTTGEAPPG AIHKDTPMVQ AEMQSYILQA 660 ETPITEAPHL ARSEVSLTHL PSAAGEPSSE PSPLSAKEPA KGGPRSKKAR TKRSGPSHPR 720 QRQAKTFEVD GDFCFGVREL VPNTFELGGW PRDLQQSINV VYKPAKAAID GTVPDAALRG 780 QGKMTPPQGL LQKEGMRELE PAQAHAGSND KGRATQTTLV KHKSEPVGKL HGQALTELHG 840 PPSLLPPPRL LPPARPALGM TDELVFCPVE GPPLIVATPE GGSVANPRGL LRAVSDPSSA 900 AKAYAANALE QAGASPEPHD LKEVDWKGVL KVSVGGTEPD EICALVAKLP ASDAEQLPST 960 LLISSFKPRA EIFMANVGSK PVLLRLATCA EASKKIIRKM EEDKLAAIAH LKAFDFALIP 1020 HTNQKNGLHI VGLKLEMDLR QAGTRSFQPQ *

Sequence ? help Back to Top

Protein Sequence Length: 1051 aa Download sequence

MAAQSTLQNR KSSQMLIRVI SSSPCCLQRL MVHFIKQQNE QGPLGLREVA TGKSKHTDLT  60
CQVWRSPRSP VAVAQGTNNG FGQLELGFIS ATKGTAKTLS SPASIAGDDA KRSLGRTTGE  120
TERATPAHSD PTDEHCTSGQ AGRGSQLNRK RRRKETPICI LHSTGGASAG GACDHCGRRN  180
SPAWRRGPAD KPHLCNACGV RFLGKGTLEG YMPGMKQRED FKLPDDNLCG ALDEEGGDDT  240
DSAKTTMPQL SGKTRCRSQR TPRRNTTPRS DMVSGPPAVA DAESDDGRAA SCYSCWADCV  300
RMALSHHPGN ARKVVSFLEN ACGLAMAEPL SSPHFLAELN RVRDLYWMDK NRAMDALKHL  360
LEDEAALTLS GAEALLTLSG ASPMPDDRKR DALCSTEDVN SRDSSWAVCE ECGRARETVC  420
WLPVWWRYLC GDQDYSKNPE LTCKDVGDFV APRGLPRSEV SPVIRRGIRG QGPQNRFLPA  480
SVGRSNARRT SGVADMSTEG FKVVDNPVYD GYGSPKSPRH KPFTGLRSSF TDSLSASDFE  540
FLRWLPQGWR MDFGWQRLGE PGRVSPAGLN YFAPDGSGPY QSQEDVLARI AAQPSFRPPQ  600
PGATAATFTP GPAFHRSPSG SVLVSMCGGA VSTTGEAPPG AIHKDTPMVQ AEMQSYILQA  660
ETPITEAPHL ARSEVSLTHL PSAAGEPSSE PSPLSAKEPA KGGPRSKKAR TKRSGPSHPR  720
QRQAKTFEVD GDFCFGVREL VPNTFELGGW PRDLQQSINV VYKPAKAAID GTVPDAALRG  780
QGKMTPPQGL LQKEGMRELE PAQAHAGSND KGRATQTTLV KHKSEPVGKL HGQALTELHG  840
PPSLLPPPRL LPPARPALGM TDELVFCPVE GPPLIVATPE GGSVANPRGL LRAVSDPSSA  900
AKAYAANALE QAGASPEPHD LKEVDWKGVL KVSVGGTEPD EICALVAKLP ASDAEQLPST  960
LLISSFKPRA EIFMANVGSK PVLLRLATCA EASKKIIRKM EEDKLAAIAH LKAFDFALIP  1020
HTNQKNGLHI VGLKLEMDLR QAGTRSFQPQ *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	149	153	RKRRR
2	149	155	RKRRRKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	2e-11	GATA family protein