PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.4_1s0023.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

C2H2

Protein Properties

Length: 513aa MW: 54906.1 Da PI: 8.4891

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.4_1s0023.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.4e-05	350	370	5	23
TTTEEESSHHHHHHHHHH..T CS zf-C2H2 5 dCgksFsrksnLkrHirt..H 23 Cg+sF+++ +L++H+ + H Bobra.4_1s0023.1.p 350 TCGRSFKSPQDLRSHMASsgH 370 6***************87555 PP

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence
MIRDGMINRT TELDSRASIN PNEGCSTFVS DSTDTSLVEN RDPNCAVPRP QKDRIAMAAA 60 VLKRHYRQAF DATDEAFSRK KIQRQGVSVK ACSSDCCSEA RDPSWCMFGS MQVADLDWSS 120 VFSSAIMPRA APLAGQSCFQ LPCGITVHMV EQEQQLEAAL QTLKESMQDG AVAIDLEWRP 180 DYGRGYSKVA LMQLATSYHC VLIRMCRLRK KSLPGLAQFL RDPSLVFVGY SWDGADEDKL 240 QRTMGLGRRD FAKFIDVREV SQTLGYHGYG LATLAERIFG TPFPKSRKVT MSNWEAPQLS 300 WSQVTYAALD ALVCGHLLRS LRRWHSSPCV CPGCQQRVGA HLGGSGFDCT CGRSFKSPQD 360 LRSHMASSGH PSSVFPCAAC GRVVRLAHAG VRGAGVGGAA GSGEEGREEI GPRLEDGGWG 420 DRGAEEGAAG SEGAGEGQRV LAGGPQGSVE GGKLGDPAVG PATPDPCGRR AGRGGCEAGR 480 SERKPCRKKE GAKKPGRGGK SVRERSALVV AA*

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence

MIRDGMINRT TELDSRASIN PNEGCSTFVS DSTDTSLVEN RDPNCAVPRP QKDRIAMAAA  60
VLKRHYRQAF DATDEAFSRK KIQRQGVSVK ACSSDCCSEA RDPSWCMFGS MQVADLDWSS  120
VFSSAIMPRA APLAGQSCFQ LPCGITVHMV EQEQQLEAAL QTLKESMQDG AVAIDLEWRP  180
DYGRGYSKVA LMQLATSYHC VLIRMCRLRK KSLPGLAQFL RDPSLVFVGY SWDGADEDKL  240
QRTMGLGRRD FAKFIDVREV SQTLGYHGYG LATLAERIFG TPFPKSRKVT MSNWEAPQLS  300
WSQVTYAALD ALVCGHLLRS LRRWHSSPCV CPGCQQRVGA HLGGSGFDCT CGRSFKSPQD  360
LRSHMASSGH PSSVFPCAAC GRVVRLAHAG VRGAGVGGAA GSGEEGREEI GPRLEDGGWG  420
DRGAEEGAAG SEGAGEGQRV LAGGPQGSVE GGKLGDPAVG PATPDPCGRR AGRGGCEAGR  480
SERKPCRKKE GAKKPGRGGK SVRERSALVV AA*