PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.43_1s0087.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

MYB_related

Protein Properties

Length: 1110aa MW: 116329 Da PI: 8.6637

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.43_1s0087.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.5	8.4e-15	69	113	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +W++ E++l+v+a +++G Wk+I +++g +t+ q++s+ qk+ Bobra.43_1s0087.1.p 69 REKWSESEHDLFVEALRLYGRS-WKSIEAHIG-SKTAVQIRSHAQKH 113 789***************55.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 1110 aa Download sequence
MTEAPGLAQL PEDDEENGLS DGAAPFCSPS MQAGEEEGDV LDRGLGGTSG DAGKGKGKAR 60 KPYVVSRPRE KWSESEHDLF VEALRLYGRS WKSIEAHIGS KTAVQIRSHA QKHFQKLQRE 120 QISRDDGPSE DIPPPRPKRR PSHPYPRKGI ESESGDLQPW GSGLPVLDDQ AVSLLKDANA 180 NQVAECASAA AAAAAFAVIN AAGENVQMQF QKAPPTCFPF YGLTPTALLH IAMQSPLNPA 240 QINQLSGPFN QHSLNMFQHA ALHQQAQMLG GHVLHQSHHQ SHRKHHHHHS MKHHGSKDTG 300 GVRVHRPLAR PANAGDQTLD PVAIALAGTM GGLLDGREDV EAVGLPDINN GASTDVLPYL 360 PAMSGDQEQT ATSDQLRKRR PAVVPRPARS DGDSAISGEH SDGREGFNHL GDTGATSQDR 420 TAGKVGLPEC GPSGWQQAAP PWPLWHLSAV PMQPLWHMMP PQPQYAPEEW RTLILAAAQH 480 ASQQEIARFA QVAMGPGGMG PPQGCSTGAR TSTDKSPSPS AVARMERSLK IQAQRAQRQR 540 ERAAGLSLSG AGSGRRSASD IKQDEENSPI SGIDETNTNL TVGPSPCFSG RAQGIAVQLF 600 CPDPLLLACH RSPIRVRGYV VCSCTYCGPL DVGAIGKAFG KPTLIQLRRF VFSDAEDHCN 660 WLPFGPASGL LGCGFSYWKR MCSRSARHPL SCAFGRDGKM WKAFAVSSRH IIFGKQLTSG 720 NLGRSGAQQP GLPKVPGQAA VRGKARNTFC GSEQAEGSGE GSREGSREGS GSGEGSNPTG 780 NGNSGANNAS GNNNSGSGEA VRHSGRGSNN KANSGSGNGD SGSADHTHPH RMEAAAELAN 840 AGQSKAPANA PHSGHGGRLG VNPEGGGTGS DESGADMAKT SKGNSSGQGS GRAPTGIPSL 900 GPNPMGPTVG MPQGHPGLAN WYMNSSQGIH EPLLQQQVQG MVSWPGPMSN MPLDIMQRLL 960 GFFPTPQVPH GHFHPSPLVP STDTTTSGNV TGQGFQPYKA PRSGTAHASR VGPACPSSGA 1020 LSVASKRTVV HQVHPSASEI AHPPKKRLHA SLSGGYLSAE GLPVRKRSHT AGTISLPGPE 1080 SSSGVLFSGL RRGQAPAAPA DAATLPENP*

Sequence ? help Back to Top

Protein Sequence Length: 1110 aa Download sequence

MTEAPGLAQL PEDDEENGLS DGAAPFCSPS MQAGEEEGDV LDRGLGGTSG DAGKGKGKAR  60
KPYVVSRPRE KWSESEHDLF VEALRLYGRS WKSIEAHIGS KTAVQIRSHA QKHFQKLQRE  120
QISRDDGPSE DIPPPRPKRR PSHPYPRKGI ESESGDLQPW GSGLPVLDDQ AVSLLKDANA  180
NQVAECASAA AAAAAFAVIN AAGENVQMQF QKAPPTCFPF YGLTPTALLH IAMQSPLNPA  240
QINQLSGPFN QHSLNMFQHA ALHQQAQMLG GHVLHQSHHQ SHRKHHHHHS MKHHGSKDTG  300
GVRVHRPLAR PANAGDQTLD PVAIALAGTM GGLLDGREDV EAVGLPDINN GASTDVLPYL  360
PAMSGDQEQT ATSDQLRKRR PAVVPRPARS DGDSAISGEH SDGREGFNHL GDTGATSQDR  420
TAGKVGLPEC GPSGWQQAAP PWPLWHLSAV PMQPLWHMMP PQPQYAPEEW RTLILAAAQH  480
ASQQEIARFA QVAMGPGGMG PPQGCSTGAR TSTDKSPSPS AVARMERSLK IQAQRAQRQR  540
ERAAGLSLSG AGSGRRSASD IKQDEENSPI SGIDETNTNL TVGPSPCFSG RAQGIAVQLF  600
CPDPLLLACH RSPIRVRGYV VCSCTYCGPL DVGAIGKAFG KPTLIQLRRF VFSDAEDHCN  660
WLPFGPASGL LGCGFSYWKR MCSRSARHPL SCAFGRDGKM WKAFAVSSRH IIFGKQLTSG  720
NLGRSGAQQP GLPKVPGQAA VRGKARNTFC GSEQAEGSGE GSREGSREGS GSGEGSNPTG  780
NGNSGANNAS GNNNSGSGEA VRHSGRGSNN KANSGSGNGD SGSADHTHPH RMEAAAELAN  840
AGQSKAPANA PHSGHGGRLG VNPEGGGTGS DESGADMAKT SKGNSSGQGS GRAPTGIPSL  900
GPNPMGPTVG MPQGHPGLAN WYMNSSQGIH EPLLQQQVQG MVSWPGPMSN MPLDIMQRLL  960
GFFPTPQVPH GHFHPSPLVP STDTTTSGNV TGQGFQPYKA PRSGTAHASR VGPACPSSGA  1020
LSVASKRTVV HQVHPSASEI AHPPKKRLHA SLSGGYLSAE GLPVRKRSHT AGTISLPGPE  1080
SSSGVLFSGL RRGQAPAAPA DAATLPENP*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18330.1	2e-23	MYB_related family protein