PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bobra.152_3s0068.1.p
Organism
Botryococcus braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
Family C3H
Protein Properties Length: 392aa    MW: 43552 Da    PI: 7.8477
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bobra.152_3s0068.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.5e-06236261126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           ykte C+  +++G C  G +C++aH+
  Bobra.152_3s0068.1.p 236 YKTEFCPEVLAGGGCDKGIQCQYAHD 261
                           9************************6 PP
2zf-CCCH17.29.4e-06286306626
                           -SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                           C +f+ t  C  G +C+FaHg
  Bobra.152_3s0068.1.p 286 CEHFMTTNSCASGLTCSFAHG 306
                           ********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    
MEECGFCRDS IAPSSDSHVS VTCSSCGDTK WHRRCTCNHA KALNSAKNPK NRQTEENAMN  60
DPEQLIKNQR CPRTIRAKRC KGKVTHLSYE HPKWRRGGPQ ADQNGPGWKP CPADHWEFLS  120
GQLADFAAEK GLAAQDFHTK LCARIKQTGE VCPDKSCIDA HSVRELRLHQ AMQMKHVPHG  180
YKAIFCDSPS EMECSKGLHC PNAHEAGEWN LRKAIDNEEK SFRNWGDDTP PLNEEYKTEF  240
CPEVLAGGGC DKGIQCQYAH DSEEFRKYAA ARRGRVDEFN FKIQFCEHFM TTNSCASGLT  300
CSFAHGAGDM RWPAAVARKK VVLDASGNYK SQFCNSPDCS DPVGCAKYHT QADKLEPGAL  360
SYTCAPSWRS VGTAGSIERL HLALSPIPPR I*