PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.106_1s0061.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

MYB_related

Protein Properties

Length: 655aa MW: 73511.2 Da PI: 9.9396

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.106_1s0061.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.3	1.8e-08	597	641	3	45
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+ ++ lv+a k+ ++ +W++Ia+ ++ +R+ +c r+ Bobra.106_1s0061.1.p 597 AWTEVQELALVQALKKVAKDdaeRWDKIAALVP-NRSKLECMKRFK 641 8******************************.*******997 PP

Sequence ? help Back to Top
Protein Sequence Length: 655 aa Download sequence
MGKILLATHS MRLPGDNLVF LIPKKKIMTM TNRNLMMGIY PQPTAKLMIN PRQGQTGRGT 60 GKKKKKSEKV DLYELLGLEN VRWMATEEQI KSAYKKKALL HHPDKAGESG TEKFKAIQEA 120 FDVLSDPAKR REFDSTDDFD DTLPVDCAPQ DFFKVFGPAF RRNARWSVAQ PVPDFGDENT 180 EWDKVNAFYD FWYAFKSWRE FPHPDEEDIE QFETREERRY FERINAKLRE VGKKEERRRF 240 KEFISKAYEL DPRVARRKLE KKLEREKKKN EKAEAARLRA EELERERREA AERAEAEEAR 300 AAEEAAEQRK IRQEERRAMK KERQLLRRLC SGIALPDEDL ESLCASLNLE ELQSLNVDIS 360 AEGVTQQNRL MMVTDRFADL KQARQQGEIA KREAQENAAR SESDAKKKAA AAAARDWSDE 420 EVRLLQKGLV KFPVGTPRRW EQVTAYVRTR TQDEVTEMAK VGLKARPPST ETFTVVKKRQ 480 GNTTIKDNAT SRLEAFTDVE INLKGPAALA VSAEPPVSAG VASSSGTART TTGKAAAAAE 540 GPALKNGAAQ KDGSLGAAKA TAAPESSANS SQSGPVLRGD SGGHARSENG AATSESAWTE 600 VQELALVQAL KKVAKDDAER WDKIAALVPN RSKLECMKRF KEIRTSFKSK KAGS*

Sequence ? help Back to Top

Protein Sequence Length: 655 aa Download sequence

MGKILLATHS MRLPGDNLVF LIPKKKIMTM TNRNLMMGIY PQPTAKLMIN PRQGQTGRGT  60
GKKKKKSEKV DLYELLGLEN VRWMATEEQI KSAYKKKALL HHPDKAGESG TEKFKAIQEA  120
FDVLSDPAKR REFDSTDDFD DTLPVDCAPQ DFFKVFGPAF RRNARWSVAQ PVPDFGDENT  180
EWDKVNAFYD FWYAFKSWRE FPHPDEEDIE QFETREERRY FERINAKLRE VGKKEERRRF  240
KEFISKAYEL DPRVARRKLE KKLEREKKKN EKAEAARLRA EELERERREA AERAEAEEAR  300
AAEEAAEQRK IRQEERRAMK KERQLLRRLC SGIALPDEDL ESLCASLNLE ELQSLNVDIS  360
AEGVTQQNRL MMVTDRFADL KQARQQGEIA KREAQENAAR SESDAKKKAA AAAARDWSDE  420
EVRLLQKGLV KFPVGTPRRW EQVTAYVRTR TQDEVTEMAK VGLKARPPST ETFTVVKKRQ  480
GNTTIKDNAT SRLEAFTDVE INLKGPAALA VSAEPPVSAG VASSSGTART TTGKAAAAAE  540
GPALKNGAAQ KDGSLGAAKA TAAPESSANS SQSGPVLRGD SGGHARSENG AATSESAWTE  600
VQELALVQAL KKVAKDDAER WDKIAALVPN RSKLECMKRF KEIRTSFKSK KAGS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	256	269	RRKLEKKLEREKKK
2	257	270	RRKLEKKLEREKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11450.1	1e-72	MYB family protein