PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bobra.0395s0041.1.p
Organism
Botryococcus braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
Family AP2
Protein Properties Length: 268aa    MW: 29580.2 Da    PI: 10.3135
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bobra.0395s0041.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.56e-123483155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         s y+GV+ ++ ++rW+A+++        k+++lg f+++ +Aa a++ a+++ +g
  Bobra.0395s0041.1.p 34 SPYRGVSHHRLTQRWEASLWLE-----GKQIYLGGFDSEIDAAHAYDLAALACKG 83
                         68****************9994.....4**********99**********98765 PP
2AP232.12.8e-10126169149
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49 
                          s+y+GV+  + ++rW+A++  +  +g rk++slg + t+eeAa a+++a
  Bobra.0395s0041.1.p 126 SRYRGVS-GE-DNRWEARVGAF--RG-RKNVSLGIYSTEEEAAHAYDRA 169
                          78****8.55.8******5554..33.6*******************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MARPASQRSN KSNGVGRIKT TSTKVSPQRT SRSSPYRGVS HHRLTQRWEA SLWLEGKQIY  60
LGGFDSEIDA AHAYDLAALA CKGTHVPTNY PAQVYAEQLE AVRDKPKEEV VALVRRNSSA  120
FSRGRSRYRG VSGEDNRWEA RVGAFRGRKN VSLGIYSTEE EAAHAYDRAL IIGKRRQAKT  180
NFPLSVYDEE VNMAILSITS TYGSIHETAG SDFYNTCLLP TSRPTGSEPP SPKGKSSTGR  240
AQKGGRPRNV CPIYILLKDF EIALTVR*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.11e-31AP2 family protein