PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0353s0009.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

GATA

Protein Properties

Length: 570aa MW: 64516.3 Da PI: 7.2833

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0353s0009.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	39.4	8.2e-13	230	263	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+nC+t +T+lWR ++d + CnaCG+y + ++ Bobra.0353s0009.1.p 230 CANCHTDTTSLWRPDKDSGIIYCNACGIYAKTHN 263 **************77777********986 PP
2	GATA	41.8	1.5e-13	458	492	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCgt++T+lWR+++ ++ +CnaCGly r kg+ Bobra.0353s0009.1.p 458 CANCGTKETSLWRKEKGTERIVCNACGLYARTKGK 492 **************77777********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence
MEHDEAKQRA DWENPANSLS PIILSPLDRI SPPSMKQTAD AEYGVPVGHH PNTPWSVHEI 60 KAFVFANKVI GKRFDSISLF IGTKSFQECA DFYHHRFKHS DAYMWSITPT EILQHLSQKI 120 VLETPDGATS LDSDKAAEIC RVFEQFLEGG RTDSEFLQDL RSLLPDDQLS TIFPAELGNL 180 QRMCRPTASR VRKRPLATRA GIKIFPRQND RDLPLQEPPI CTDRGGIQTC ANCHTDTTSL 240 WRPDKDSGII YCNACGIYAK THNGASRPKR LWIKDEARVQ QHVRNVQQPP ARVESCYNPQ 300 NSSSEEERSW QFRFSGADSG ENSCRTNTSL EVSSHQARKS RNCRSQYRKL RVSLANDRDY 360 QLEPREEFVS LRTIAVQTDL LVWADDYNAS QLLTCYGHPE ERCELDEEQI VFAEVLRSLK 420 RCRVEPEDVS WPITYKHFMY SAPDTAPDGE TRDPGRTCAN CGTKETSLWR KEKGTERIVC 480 NACGLYARTK GKARDPSRQI NKERRLSKGP HLAADDTLRV SEEDIGALED SRQAVQLRQP 540 SYAQAFSGLA DVLPKSGKEP SCQIQVNAR*

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence

MEHDEAKQRA DWENPANSLS PIILSPLDRI SPPSMKQTAD AEYGVPVGHH PNTPWSVHEI  60
KAFVFANKVI GKRFDSISLF IGTKSFQECA DFYHHRFKHS DAYMWSITPT EILQHLSQKI  120
VLETPDGATS LDSDKAAEIC RVFEQFLEGG RTDSEFLQDL RSLLPDDQLS TIFPAELGNL  180
QRMCRPTASR VRKRPLATRA GIKIFPRQND RDLPLQEPPI CTDRGGIQTC ANCHTDTTSL  240
WRPDKDSGII YCNACGIYAK THNGASRPKR LWIKDEARVQ QHVRNVQQPP ARVESCYNPQ  300
NSSSEEERSW QFRFSGADSG ENSCRTNTSL EVSSHQARKS RNCRSQYRKL RVSLANDRDY  360
QLEPREEFVS LRTIAVQTDL LVWADDYNAS QLLTCYGHPE ERCELDEEQI VFAEVLRSLK  420
RCRVEPEDVS WPITYKHFMY SAPDTAPDGE TRDPGRTCAN CGTKETSLWR KEKGTERIVC  480
NACGLYARTK GKARDPSRQI NKERRLSKGP HLAADDTLRV SEEDIGALED SRQAVQLRQP  540
SYAQAFSGLA DVLPKSGKEP SCQIQVNAR*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49300.1	3e-06	GATA family protein