PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bobra.0324s0008.1.p
Organism
Botryococcus braunii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
Family C3H
Protein Properties Length: 329aa    MW: 36898.1 Da    PI: 7.4243
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bobra.0324s0008.1.pgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-12183208126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          y   lC+++ +tG+C yGd+CkF H+
  Bobra.0324s0008.1.p 183 YQPDLCKDYKETGYCGYGDSCKFVHD 208
                          6789*********************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MSEHPSAEAP PSFEGDAVPS ALDKLRAGVA EFKKKNRANI RKRAAAEDSD KDGEDFGLVR  60
KPKQQKDSAL AFSTKQAGPS KLELFKHEGN RALQQSTDQG ATRTLETETE FDRDARALRE  120
AVLRQGVEEG AAAEEGVYRG MKAYTDYRKG FRQEHTIASE KGSGAHGPLR ASTNMRMTVR  180
FDYQPDLCKD YKETGYCGYG DSCKFVHDRS DYKSGWELER EWQAQQKAKR EAKWVEEAEL  240
DGGPPDPDSV DAGREDDLPF ACYICRKPWA ELEDPVVTHC KHYFCERCAL RHNAKSRKCY  300
VCGAATSGIF NAALDIEKRL KQQKTNRP*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06420.26e-92C3H family protein