PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bobra.0324s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
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Family | C3H | ||||||||
Protein Properties | Length: 329aa MW: 36898.1 Da PI: 7.4243 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.2 | 2.4e-12 | 183 | 208 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y lC+++ +tG+C yGd+CkF H+ Bobra.0324s0008.1.p 183 YQPDLCKDYKETGYCGYGDSCKFVHD 208 6789*********************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence |
MSEHPSAEAP PSFEGDAVPS ALDKLRAGVA EFKKKNRANI RKRAAAEDSD KDGEDFGLVR 60 KPKQQKDSAL AFSTKQAGPS KLELFKHEGN RALQQSTDQG ATRTLETETE FDRDARALRE 120 AVLRQGVEEG AAAEEGVYRG MKAYTDYRKG FRQEHTIASE KGSGAHGPLR ASTNMRMTVR 180 FDYQPDLCKD YKETGYCGYG DSCKFVHDRS DYKSGWELER EWQAQQKAKR EAKWVEEAEL 240 DGGPPDPDSV DAGREDDLPF ACYICRKPWA ELEDPVVTHC KHYFCERCAL RHNAKSRKCY 300 VCGAATSGIF NAALDIEKRL KQQKTNRP* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06420.2 | 6e-92 | C3H family protein |