PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0283s0006.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

AP2

Protein Properties

Length: 773aa MW: 83349.3 Da PI: 10.3623

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0283s0006.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	33.6	9.9e-11	569	618	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslg.kfgtaeeAakaaiaarkkleg 55 +y GV +++k++rW A++r + +++lg ++ t+eeAa+a+++ ++kl+g Bobra.0283s0006.1.p 569 KYLGVGFKPKTQRWYAQLRNG-----KEYYWLGcNYTTPEEAARAYDRLARKLRG 618 899************9994.....699999989****************99 PP
2	AP2	22.6	2.6e-07	705	757	1	55
AP2 1 sgykGV.rwdkkrgr..WvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV r+++k+g W A+I + + +lg+f t+e+Aa+a ++ + l+g Bobra.0283s0006.1.p 705 SRYRGVcRFNPKSGPsrWKAQIVC------AgQVKHLGYFATEEDAARAFDRSAVVLRG 757 79*******999677988......34999**************99988877 PP

Sequence ? help Back to Top
Protein Sequence Length: 773 aa Download sequence
MSFIFGNGST PAPTVPLPHP WEPQWPGSMA GFPRLAPIQQ QAYPPNLFTM LLLAGNSSGM 60 GAQLPAFQAD TSPALGTSPW QYCQQIPQAQ QPSLPLLLQI RDALQSVQHL QMRPENQPFR 120 DALPQQSRGA LPQAGPGATG VFLSTLPLSA PSLGWSVADA ASRASMYSRP SPASHMHWDP 180 TSGGLQNKLM GMDLLLEGGR ISNSLASGWQ GGRQHSSLMP SYGNQWDSGA TSFGQAWRPP 240 AFENTAMNGQ FQARPVDSHN LLMGRAASKP SSNFQELFAA VGYFLAANLP VGTMQGVSAS 300 AKVLKGRLLL LMLLCGDRLH SFAGRMLEYA ERKGLLSGNF GAPKATIKVL RPRQPRPGRV 360 KEPKGLRALS RSPAGQAPSQ APKWPVRDIE AKLCADAGNS KGMSSGEARS LKRSSCSANG 420 LLSAASPPAR PSGSRLLESF NSAVPGKWVQ AKQSMHSPGF QAAVPLACRD ADASCSQHEG 480 AAHDGGQQPR RCTANRGSLD PVKYGHEGSG IRTSGCSRPE LHKPLATLLV TAASLLAEDH 540 PSGRRPNPFL KTEERSRSPA ANVQEPRRKY LGVGFKPKTQ RWYAQLRNGK EYYWLGCNYT 600 TPEEAARAYD RLARKLRGPQ TQPVNFPLED DEGPDVAFAH RRGVKRKQMS FCMGKSRDSE 660 GPSSPGSRHA LPFSGDEDYL TSGAMETADS DGQRYVSPSV RRGTSRYRGV CRFNPKSGPS 720 RWKAQIVCAG QVKHLGYFAT EEDAARAFDR SAVVLRGPTA ELNFPLENTG QI*

Sequence ? help Back to Top

Protein Sequence Length: 773 aa Download sequence

MSFIFGNGST PAPTVPLPHP WEPQWPGSMA GFPRLAPIQQ QAYPPNLFTM LLLAGNSSGM  60
GAQLPAFQAD TSPALGTSPW QYCQQIPQAQ QPSLPLLLQI RDALQSVQHL QMRPENQPFR  120
DALPQQSRGA LPQAGPGATG VFLSTLPLSA PSLGWSVADA ASRASMYSRP SPASHMHWDP  180
TSGGLQNKLM GMDLLLEGGR ISNSLASGWQ GGRQHSSLMP SYGNQWDSGA TSFGQAWRPP  240
AFENTAMNGQ FQARPVDSHN LLMGRAASKP SSNFQELFAA VGYFLAANLP VGTMQGVSAS  300
AKVLKGRLLL LMLLCGDRLH SFAGRMLEYA ERKGLLSGNF GAPKATIKVL RPRQPRPGRV  360
KEPKGLRALS RSPAGQAPSQ APKWPVRDIE AKLCADAGNS KGMSSGEARS LKRSSCSANG  420
LLSAASPPAR PSGSRLLESF NSAVPGKWVQ AKQSMHSPGF QAAVPLACRD ADASCSQHEG  480
AAHDGGQQPR RCTANRGSLD PVKYGHEGSG IRTSGCSRPE LHKPLATLLV TAASLLAEDH  540
PSGRRPNPFL KTEERSRSPA ANVQEPRRKY LGVGFKPKTQ RWYAQLRNGK EYYWLGCNYT  600
TPEEAARAYD RLARKLRGPQ TQPVNFPLED DEGPDVAFAH RRGVKRKQMS FCMGKSRDSE  660
GPSSPGSRHA LPFSGDEDYL TSGAMETADS DGQRYVSPSV RRGTSRYRGV CRFNPKSGPS  720
RWKAQIVCAG QVKHLGYFAT EEDAARAFDR SAVVLRGPTA ELNFPLENTG QI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	641	647	RRGVKRK
2	641	648	RRGVKRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57390.1	3e-12	AP2 family protein