PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0201s0013.4.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

CAMTA

Protein Properties

Length: 1226aa MW: 133266 Da PI: 6.8086

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0201s0013.4.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	153.5	4.6e-48	33	149	2	117
CG-1 2 lkekkrwlkneeiaaiLenfekheltl..elktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahse 89 +k k+ wlkn e++++L+n++++++ +++++p+ gs++L++rk vr+frkDG++w+kk dgktvrE+hekLKvg+ ++l+cyYah++ Bobra.0201s0013.4.p 33 TKGKTSWLKNPEVCELLMNHASYNMPIsrDAPNQPPGGSIFLFDRKAVRFFRKDGHNWRKKADGKTVRETHEKLKVGNQDMLNCYYAHAN 122 56699****************97665699******************************************************* PP CG-1 90 enptfqrrcywlLeeelekivlvhylev 117 ++ +qrrcywlL +e ++ivlvhyl+ Bobra.0201s0013.4.p 123 QDDGLQRRCYWLLSSE-DDIVLVHYLNI 149 ***********9.******985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1226 aa Download sequence
MDTRNKQAPS GGAAVPIDPS DPNLLPKVRE ILTKGKTSWL KNPEVCELLM NHASYNMPIS 60 RDAPNQPPGG SIFLFDRKAV RFFRKDGHNW RKKADGKTVR ETHEKLKVGN QDMLNCYYAH 120 ANQDDGLQRR CYWLLSSEDD IVLVHYLNIE KDKSGVRKNE NINDFERTRS RTSNFSASSS 180 GNFGPGLAGL IPGLTGLPGD ASQSFLPLTA SLQGGIGSLF DLYSQTEENA VRRELQQGSS 240 YVDNLLPNAW GTIRNGGGAG LDPGLPDWSS HPSMLTNDLN DQAHLVEHAG SLRLIELGFP 300 EDPWSSDLAN AMRTPSLEMR IQSSELRQNL RARQQSMERN ALMGIPHNNL FSGGTNSRAA 360 LGLGNLNLGA PNMFGNVPPR PGAQGRGPGQ AFPRGPQGLD QDRGMKVSQR PYTGMNGAGL 420 PLGQASNSLQ MLQQQHFQQQ LDMQLAQAMN TAAVQQQHQQ DQQLLNSAAD LNAVYVRQQQ 480 QQQQQQQQQH QGRMGINQWA NDLVAGTLPI GHSDRLGDLS GLPAHVLMGH GPLAPQPLTD 540 QNQGFPRALS EGHHPIQMMA PPPAEQAPQQ NLLVEMNEPT QQMWRGNNTF RTGQVLAMER 600 QLNDIDRQTM EALMTSRSGK LNSQASTSHV IDSKVKTLED KLERLEAGSQ MIFSGALPSQ 660 PSESGGQRSV TMRTPSAGGI EVSQQMSPGD STESRREDER QTSQRPPSSL RNGLSASADS 720 IPFELVDFTP DWDFTVGGAK MILTFKTSDV SIAERQLVVM FDEDQVPGTV ICQGAVRCHV 780 PPHEVGTVKL CVATEDGVPL CRPQPFTYRL PADAPRVADA MALVTQPDRE LQLHLVNMLL 840 AVAPSHSDGA SDTRTSGHSI SAEGSRQHRT PNPGTPSPSE DEPVVMDGQG NLAALDVHQL 900 EKLLILLLER KFKFLASLPD GRDASLPRSK PTQSRDVLSQ LSPGGVGLIH FAAALGYDWA 960 VNILLQGGAN VQLKDAWGMT PLHWAAMRGH ERTVALLIVR DASVDLLSFP TQKRSGRTAA 1020 DLASQNGHPG MAAYLAELTV MEHLEKQDKK IMSDGLSGTD EESHKPEFHR PGSAPHRRKR 1080 TRAPLGVDVP TDWGSPGCSE NSPVSVDSNK GLDNGIRGGA LAQLMCLVHR ELWLLHREPV 1140 LSGVCVCVCV CVCVCVRVCV RACVCVCVCV CVCVCVCVCV CVCVCVCVCV CVCVILSEGC 1200 AWCLATYEVL PGRRSFGIFR MSACA*

Sequence ? help Back to Top

Protein Sequence Length: 1226 aa Download sequence

MDTRNKQAPS GGAAVPIDPS DPNLLPKVRE ILTKGKTSWL KNPEVCELLM NHASYNMPIS  60
RDAPNQPPGG SIFLFDRKAV RFFRKDGHNW RKKADGKTVR ETHEKLKVGN QDMLNCYYAH  120
ANQDDGLQRR CYWLLSSEDD IVLVHYLNIE KDKSGVRKNE NINDFERTRS RTSNFSASSS  180
GNFGPGLAGL IPGLTGLPGD ASQSFLPLTA SLQGGIGSLF DLYSQTEENA VRRELQQGSS  240
YVDNLLPNAW GTIRNGGGAG LDPGLPDWSS HPSMLTNDLN DQAHLVEHAG SLRLIELGFP  300
EDPWSSDLAN AMRTPSLEMR IQSSELRQNL RARQQSMERN ALMGIPHNNL FSGGTNSRAA  360
LGLGNLNLGA PNMFGNVPPR PGAQGRGPGQ AFPRGPQGLD QDRGMKVSQR PYTGMNGAGL  420
PLGQASNSLQ MLQQQHFQQQ LDMQLAQAMN TAAVQQQHQQ DQQLLNSAAD LNAVYVRQQQ  480
QQQQQQQQQH QGRMGINQWA NDLVAGTLPI GHSDRLGDLS GLPAHVLMGH GPLAPQPLTD  540
QNQGFPRALS EGHHPIQMMA PPPAEQAPQQ NLLVEMNEPT QQMWRGNNTF RTGQVLAMER  600
QLNDIDRQTM EALMTSRSGK LNSQASTSHV IDSKVKTLED KLERLEAGSQ MIFSGALPSQ  660
PSESGGQRSV TMRTPSAGGI EVSQQMSPGD STESRREDER QTSQRPPSSL RNGLSASADS  720
IPFELVDFTP DWDFTVGGAK MILTFKTSDV SIAERQLVVM FDEDQVPGTV ICQGAVRCHV  780
PPHEVGTVKL CVATEDGVPL CRPQPFTYRL PADAPRVADA MALVTQPDRE LQLHLVNMLL  840
AVAPSHSDGA SDTRTSGHSI SAEGSRQHRT PNPGTPSPSE DEPVVMDGQG NLAALDVHQL  900
EKLLILLLER KFKFLASLPD GRDASLPRSK PTQSRDVLSQ LSPGGVGLIH FAAALGYDWA  960
VNILLQGGAN VQLKDAWGMT PLHWAAMRGH ERTVALLIVR DASVDLLSFP TQKRSGRTAA  1020
DLASQNGHPG MAAYLAELTV MEHLEKQDKK IMSDGLSGTD EESHKPEFHR PGSAPHRRKR  1080
TRAPLGVDVP TDWGSPGCSE NSPVSVDSNK GLDNGIRGGA LAQLMCLVHR ELWLLHREPV  1140
LSGVCVCVCV CVCVCVRVCV RACVCVCVCV CVCVCVCVCV CVCVCVCVCV CVCVILSEGC  1200
AWCLATYEVL PGRRSFGIFR MSACA*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	8e-43	CAMTA family protein