PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0166s0016.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

C3H

Protein Properties

Length: 1260aa MW: 130458 Da PI: 6.8596

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0166s0016.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.5	4.7e-08	1192	1213	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 +lC+ff C+ Gd+C+FaH Bobra.0166s0016.1.p 1192 RLCSFFNTPRGCRNGDQCRFAH 1213 8********************* PP

Sequence ? help Back to Top
Protein Sequence Length: 1260 aa Download sequence
MVAVIRPVTM DFWMDDSEQS LDLSLHPQDA CEQRSSLLPL GLDHNMEDSK PADLAPASTF 60 LQSLPSDPTP ASGAGGVDDE MQDWDHMATD GSAPDVHTFT SLLDGGLDPD GEGDLFGENR 120 DAGIADAPAS AASTPPVDDA CQLTSTSGRQ TGAYPEGLST DASGSELQQG PQLLPTRGVP 180 AVPAPSVTAA MPLGTQTMQL LLAPLPSSAT ASQPIDTPMS AHPIQQPPGG ALPLHLPQMP 240 QPGAPVLVPQ GANPADPSMN PILSLMQTNP LQAMLLQQAI LGTQAQLAAV MNAPSTAAAL 300 PGHPLPATLP AGQASSALQS LLTAGGAVPL ATLAGAVPLG TSMPMSSPPI LGAGPASEPL 360 PSQSLPPLSA SASAQAPTAS PGGEEGPDAK KRKRRTDLPR TRAGQRCGTC HTCRNPQFKK 420 ACETRRAEAL AAAAASGAET SGVSNGTSRT GSGDEPQPDA KPAADGKRHK PNTAAADYAT 480 LDSASTQPPA APEPPAGAPQ GPGSPKQDDR FTRDLQEIAN RSGGLRDASC VPRFEKLMEE 540 AATLNARKVL LTMINQSHRS TLSALVHSKG LGILEEWLNQ ARQSDRHVKF VAKILASLKN 600 LPVDLQGLKS CTIGKRVSNL AKKGPPEYQE AAAALVAAWK KAVDAEQSGP DKEGAKKAGP 660 KKAEGQGNGF LAHKNSLELK KAPAGSKPAA GPPAGGQPLA AVDDGLMFMA KPKPKLPPLA 720 PRSSGEIKKI KVLDAAQATK VAKEKAEEAK KIQEALKKKG KPGEVGTGGL ASGETSGPSH 780 PAGDLAGDPN SVAAPNNANT SALARPPFQF SNLTQNITRI GGLGTAPLVK GPGGPPLSYP 840 QDAAARAAAA RARIPSPEPP EHKEKAKTVS WVAEEHLVSF RVFRKDDPPI VVRQQGGPEM 900 EGKPGLAMEG GSHPPGFLLA ARKEHTDEAL HVKQLLSQKQ VSEEEEGGVV EGIVDSMYPD 960 MWWPEGGAPA AALPEEIAGG EESEAAREEA LREQGVQDPY VWDHSSSQVL VDPREAPQED 1020 VPFGQPVFIP LQPLTPARPA RGRSLGGTSS TAFTVRTSCC CTIYTATARA RSRVPARDGS 1080 PSWGRDSWTW LPGSPAPSPT SAWSVPWCTG SPGAWSTSAG TPCICSPRAS GACPTNGPTF 1140 GWAWRPRAPW GGGPPHGEGP PGPHQGWGAQ GTDEPRPSSA GRDPGDRGPP PRLCSFFNTP 1200 RGCRNGDQCR FAHIRGLGRG PCRDPQARSP QPPARLPQGF PPSLTSPPAA VLVHARVCL*

Sequence ? help Back to Top

Protein Sequence Length: 1260 aa Download sequence

MVAVIRPVTM DFWMDDSEQS LDLSLHPQDA CEQRSSLLPL GLDHNMEDSK PADLAPASTF  60
LQSLPSDPTP ASGAGGVDDE MQDWDHMATD GSAPDVHTFT SLLDGGLDPD GEGDLFGENR  120
DAGIADAPAS AASTPPVDDA CQLTSTSGRQ TGAYPEGLST DASGSELQQG PQLLPTRGVP  180
AVPAPSVTAA MPLGTQTMQL LLAPLPSSAT ASQPIDTPMS AHPIQQPPGG ALPLHLPQMP  240
QPGAPVLVPQ GANPADPSMN PILSLMQTNP LQAMLLQQAI LGTQAQLAAV MNAPSTAAAL  300
PGHPLPATLP AGQASSALQS LLTAGGAVPL ATLAGAVPLG TSMPMSSPPI LGAGPASEPL  360
PSQSLPPLSA SASAQAPTAS PGGEEGPDAK KRKRRTDLPR TRAGQRCGTC HTCRNPQFKK  420
ACETRRAEAL AAAAASGAET SGVSNGTSRT GSGDEPQPDA KPAADGKRHK PNTAAADYAT  480
LDSASTQPPA APEPPAGAPQ GPGSPKQDDR FTRDLQEIAN RSGGLRDASC VPRFEKLMEE  540
AATLNARKVL LTMINQSHRS TLSALVHSKG LGILEEWLNQ ARQSDRHVKF VAKILASLKN  600
LPVDLQGLKS CTIGKRVSNL AKKGPPEYQE AAAALVAAWK KAVDAEQSGP DKEGAKKAGP  660
KKAEGQGNGF LAHKNSLELK KAPAGSKPAA GPPAGGQPLA AVDDGLMFMA KPKPKLPPLA  720
PRSSGEIKKI KVLDAAQATK VAKEKAEEAK KIQEALKKKG KPGEVGTGGL ASGETSGPSH  780
PAGDLAGDPN SVAAPNNANT SALARPPFQF SNLTQNITRI GGLGTAPLVK GPGGPPLSYP  840
QDAAARAAAA RARIPSPEPP EHKEKAKTVS WVAEEHLVSF RVFRKDDPPI VVRQQGGPEM  900
EGKPGLAMEG GSHPPGFLLA ARKEHTDEAL HVKQLLSQKQ VSEEEEGGVV EGIVDSMYPD  960
MWWPEGGAPA AALPEEIAGG EESEAAREEA LREQGVQDPY VWDHSSSQVL VDPREAPQED  1020
VPFGQPVFIP LQPLTPARPA RGRSLGGTSS TAFTVRTSCC CTIYTATARA RSRVPARDGS  1080
PSWGRDSWTW LPGSPAPSPT SAWSVPWCTG SPGAWSTSAG TPCICSPRAS GACPTNGPTF  1140
GWAWRPRAPW GGGPPHGEGP PGPHQGWGAQ GTDEPRPSSA GRDPGDRGPP PRLCSFFNTP  1200
RGCRNGDQCR FAHIRGLGRG PCRDPQARSP QPPARLPQGF PPSLTSPPAA VLVHARVCL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	390	395	KKRKRR