PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0163s0044.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

C2H2

Protein Properties

Length: 2273aa MW: 236975 Da PI: 10.8018

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0163s0044.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00042	1282	1305	2	23
EETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt..H 23 Cp C+++ s+k nL+rH ++ H Bobra.0163s0044.1.p 1282 ICPVCNMVVSQKRNLTRHEKSaiH 1305 5*****************997666 PP

Sequence ? help Back to Top
Protein Sequence Length: 2273 aa Download sequence
MAPKTQPFCS IEKNPAFNNF KRRRVEESGI NKLSNATNAT QNGRVSNAVL SPGVPEQTFR 60 TAQNNKPTGE RPSSASSAQS VEGMPRWQQI VQSQLAGKTA SSGVDESVTQ SSSIPLPSPP 120 TKKSLREKVQ AITPCSKPIP SAHGGSEKVD KSEFSSTRNT RLSVNPFSVQ GVLRATFRAP 180 SIINATWASD NETMGGASKE KAAVFSFAVP SAGGRSPQRM VQPGNALAMS PKQREEEARP 240 SAEGLSVPAG RESCDTGVKA DSQKRGIEYT KANTNCNEHA SRVDHEAAGD GRGRRKTRRS 300 TSAVRSYSRE RSRLRMHSPR EQRPGLDQSR SSNLSRRDHR VWDSQHPGGY VEVRDGRQYE 360 RSQPGHQWRG VDRQDRSKER MLNSRHGALD LGHSPGQGRW SHGQYYEAEH GREPWSQSRD 420 NPRAGDSRQW GSRWQKRTHS PGNISIGGRS PTRKSRDLAN RKSTDGSEPP LRPRQPLDGR 480 HLETTDNQHS NHGNHRQPSW VTGVSHARQP PDRIPGSQGG CSPPRAPSPS KETRASAVDE 540 HSAKQQARLR AWIQAKKNLP KVHAMSGFPA PGGVNHTSTS LTWSLDKPAP SLTGGKAPSE 600 ELRPSVLVLS AMPGLASPGS LQEQGSLRTD QNRRMTGPTS QHPVGPILQT PDATGQALPC 660 PSSGRGVSGQ SKVGQAALKP SPVSATPPHG YPDWLANYGS SSICTSSTEA ASGEPADVAR 720 TPASRQVSPR AQEQVPVASP PQGDGPDGSR LSNRPSGADL QTSVRKEAAN SGVSPSARPV 780 HGGTRQQESK QATFSPYGEC PSLRELEARD LGPQRSASPQ TVGPAAVSSS QNRSQNPAQP 840 EQGVPRPGRQ TLSSETHPPP KHPMAVRSAM VNPVIAEPWR VSLETVPVPN ASSQCFNPVS 900 AHPLLEPCSH KYSGPPLGFQ TAPQGPWPSP PDRWNVAGGV SRRPVTSPPP LRSPQGHPWH 960 LLPATTPSPP RPPHGYVLKT AGPPVGTAGG LEQPSGHVGA SSAGQAAPEK RQAELTADHG 1020 EKPLEKRHRP GNSRWDREVQ SGPVGGAPGS RGTHGGEARG ARGGEARGAH QGAHAGSREG 1080 AHEAPGGEAR GTHQGAHAGS GGGAHDAPGG EAWGAHQGAH AGPGGEDRSP EGGEAPGSKG 1140 GETSGPDGGE APGPEGGEAP GPEGGQAPGP EGGEAPGPEG GKAPGREGGE APGPDGGGAP 1200 GSEGGEAPGP KGGQAPGPEG GKAPGAHGQA HGGFPVEPKK ASNITGSLVK VATPKTKQLG 1260 SSLGRRSSQG RGTGYKSNQP TICPVCNMVV SQKRNLTRHE KSAIHIELTE ELKMESGQRL 1320 ESSVPRTSSN PDLSSSPGIA CTQQGAKAAG SRRPSATSAG KAAGASRPPA GKRKAQSDPG 1380 PVKKGSEGVV CSKKAASEQA AGVERVAGGD VAGNGPERVP APAWPGPARG SAAGRTWPRP 1440 GSARSDGQPC RIGSLKDLVV TAPTVGGPPV PLAPPIEGAP ALQKGSQHGQ GRNRSKARRS 1500 GSHLGGSSGK SSNPVEGGRG SPVCSAACGA QAAVTPPASV DGHAGSPVCT AACGAQAAGP 1560 PPASVEDHGG SPVCTAACGA QAAVPPPASV EGHAKSPVHT AVEGPSGAQM SIPPPHMPQG 1620 GTPAGPQRGD AERGAAAPCE TGVPSPLPVG GKSSQERQPR ATKRSSQSQE DRPSSRGDSV 1680 GGREAGPEAG IKTVTAAGMG PPVAKQGVSR DSSSGPQRPS GAPVPSPVAP GVLLFEGQVE 1740 GNVSSAPKSK KPRRNEAAML LEAAVPSGVV RNAPIDPSLE PRGKPFSSPR KPPPASPGTK 1800 AFVRAPCGRP VHDRKVPVND KHRTSTHGPR VENPVNKRPV QRPVVLSQPL QLDVLAKPQH 1860 SPDQAACPER SPGPRAFPQT APREAGVTAL VQQPNRQAGR DPAEGGTYKI PKPRMKSLLE 1920 LSTEPAGAQS KQQQRSRLPS PTRPQKLQPN SARLVSLKAP QEGIQRGRPR MRQAGGHKGV 1980 PTSKVGTART KTARAVGKAL HLSPGSGLRK RKFVPSSLPR NQQSRARAKG SKRRSPRVAT 2040 AAASRVAGSA INACARAKPM NEVVGTSKQG GWVPTATASR AAPLEGGVSK NLLARAVRAA 2100 AASAKHKVWE RQDINAETWA AWALTRKLKG DNFRYYGSSI HGAGLFAARD VKKGEFVIEY 2160 VGALVPSNRQ DMFEKKYLRE GIKSTYMFSL DDDWIIDATK QGNAARYINH SCDPNCVAKL 2220 VHVKDGQNHV CIFARRDINY GEELAYNYQS KATDEATREE CRCGAKNCVK WI*

Sequence ? help Back to Top

Protein Sequence Length: 2273 aa Download sequence

MAPKTQPFCS IEKNPAFNNF KRRRVEESGI NKLSNATNAT QNGRVSNAVL SPGVPEQTFR  60
TAQNNKPTGE RPSSASSAQS VEGMPRWQQI VQSQLAGKTA SSGVDESVTQ SSSIPLPSPP  120
TKKSLREKVQ AITPCSKPIP SAHGGSEKVD KSEFSSTRNT RLSVNPFSVQ GVLRATFRAP  180
SIINATWASD NETMGGASKE KAAVFSFAVP SAGGRSPQRM VQPGNALAMS PKQREEEARP  240
SAEGLSVPAG RESCDTGVKA DSQKRGIEYT KANTNCNEHA SRVDHEAAGD GRGRRKTRRS  300
TSAVRSYSRE RSRLRMHSPR EQRPGLDQSR SSNLSRRDHR VWDSQHPGGY VEVRDGRQYE  360
RSQPGHQWRG VDRQDRSKER MLNSRHGALD LGHSPGQGRW SHGQYYEAEH GREPWSQSRD  420
NPRAGDSRQW GSRWQKRTHS PGNISIGGRS PTRKSRDLAN RKSTDGSEPP LRPRQPLDGR  480
HLETTDNQHS NHGNHRQPSW VTGVSHARQP PDRIPGSQGG CSPPRAPSPS KETRASAVDE  540
HSAKQQARLR AWIQAKKNLP KVHAMSGFPA PGGVNHTSTS LTWSLDKPAP SLTGGKAPSE  600
ELRPSVLVLS AMPGLASPGS LQEQGSLRTD QNRRMTGPTS QHPVGPILQT PDATGQALPC  660
PSSGRGVSGQ SKVGQAALKP SPVSATPPHG YPDWLANYGS SSICTSSTEA ASGEPADVAR  720
TPASRQVSPR AQEQVPVASP PQGDGPDGSR LSNRPSGADL QTSVRKEAAN SGVSPSARPV  780
HGGTRQQESK QATFSPYGEC PSLRELEARD LGPQRSASPQ TVGPAAVSSS QNRSQNPAQP  840
EQGVPRPGRQ TLSSETHPPP KHPMAVRSAM VNPVIAEPWR VSLETVPVPN ASSQCFNPVS  900
AHPLLEPCSH KYSGPPLGFQ TAPQGPWPSP PDRWNVAGGV SRRPVTSPPP LRSPQGHPWH  960
LLPATTPSPP RPPHGYVLKT AGPPVGTAGG LEQPSGHVGA SSAGQAAPEK RQAELTADHG  1020
EKPLEKRHRP GNSRWDREVQ SGPVGGAPGS RGTHGGEARG ARGGEARGAH QGAHAGSREG  1080
AHEAPGGEAR GTHQGAHAGS GGGAHDAPGG EAWGAHQGAH AGPGGEDRSP EGGEAPGSKG  1140
GETSGPDGGE APGPEGGEAP GPEGGQAPGP EGGEAPGPEG GKAPGREGGE APGPDGGGAP  1200
GSEGGEAPGP KGGQAPGPEG GKAPGAHGQA HGGFPVEPKK ASNITGSLVK VATPKTKQLG  1260
SSLGRRSSQG RGTGYKSNQP TICPVCNMVV SQKRNLTRHE KSAIHIELTE ELKMESGQRL  1320
ESSVPRTSSN PDLSSSPGIA CTQQGAKAAG SRRPSATSAG KAAGASRPPA GKRKAQSDPG  1380
PVKKGSEGVV CSKKAASEQA AGVERVAGGD VAGNGPERVP APAWPGPARG SAAGRTWPRP  1440
GSARSDGQPC RIGSLKDLVV TAPTVGGPPV PLAPPIEGAP ALQKGSQHGQ GRNRSKARRS  1500
GSHLGGSSGK SSNPVEGGRG SPVCSAACGA QAAVTPPASV DGHAGSPVCT AACGAQAAGP  1560
PPASVEDHGG SPVCTAACGA QAAVPPPASV EGHAKSPVHT AVEGPSGAQM SIPPPHMPQG  1620
GTPAGPQRGD AERGAAAPCE TGVPSPLPVG GKSSQERQPR ATKRSSQSQE DRPSSRGDSV  1680
GGREAGPEAG IKTVTAAGMG PPVAKQGVSR DSSSGPQRPS GAPVPSPVAP GVLLFEGQVE  1740
GNVSSAPKSK KPRRNEAAML LEAAVPSGVV RNAPIDPSLE PRGKPFSSPR KPPPASPGTK  1800
AFVRAPCGRP VHDRKVPVND KHRTSTHGPR VENPVNKRPV QRPVVLSQPL QLDVLAKPQH  1860
SPDQAACPER SPGPRAFPQT APREAGVTAL VQQPNRQAGR DPAEGGTYKI PKPRMKSLLE  1920
LSTEPAGAQS KQQQRSRLPS PTRPQKLQPN SARLVSLKAP QEGIQRGRPR MRQAGGHKGV  1980
PTSKVGTART KTARAVGKAL HLSPGSGLRK RKFVPSSLPR NQQSRARAKG SKRRSPRVAT  2040
AAASRVAGSA INACARAKPM NEVVGTSKQG GWVPTATASR AAPLEGGVSK NLLARAVRAA  2100
AASAKHKVWE RQDINAETWA AWALTRKLKG DNFRYYGSSI HGAGLFAARD VKKGEFVIEY  2160
VGALVPSNRQ DMFEKKYLRE GIKSTYMFSL DDDWIIDATK QGNAARYINH SCDPNCVAKL  2220
VHVKDGQNHV CIFARRDINY GEELAYNYQS KATDEATREE CRCGAKNCVK WI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	21	25	KRRRV