PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0159s0035.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

C3H

Protein Properties

Length: 388aa MW: 42074.4 Da PI: 4.7024

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0159s0035.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.2	4.2e-11	3	25	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 +++Crff++ G C+yGd+C F+H Bobra.0159s0035.1.p 3 QRPPCRFFMQ-GNCRYGDSCAFSH 25 689*****.*********** PP
2	zf-CCCH	25.7	2e-08	33	57	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +f++ G C+yGd C+F H+ Bobra.0159s0035.1.p 33 PGRRVCTYFMQ-GGCHYGDDCQFEHP 57 689******.*********997 PP
3	zf-CCCH	28.4	2.7e-09	232	254	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lC +++ +G C++G+ C+FaHg Bobra.0159s0035.1.p 232 PLCVNYFSNGSCPRGNACRFAHG 254 69********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MDQRPPCRFF MQGNCRYGDS CAFSHLITPG PVPGRRVCTY FMQGGCHYGD DCQFEHPGVH 60 RGGRYGGSHQ RGRGRTGLNA SAPVWTPRGY AHANGNRHTY VPEEDDDYAS DEERFLAELE 120 EQKFFEEQRE FLEEAMPDEG IGGQASIPSI PSSELDAAID ALAEDLERTG VAVQKENPHG 180 PPQENGPQAP SAEETAAERQ EEPVEAAGSQ QEAVEAGAEA EAPARSPRPD WPLCVNYFSN 240 GSCPRGNACR FAHGLLCEVC GKHALHPDIP DDAEAHTRAC KAREERLNKQ PAAAELECSI 300 CLEKVLSKEN AGERKFGLLS CEHPFCLACH PGLASPSRLC SCPGHCGTDV PSLPYTVLLR 360 DPELSVAWES SREGDNPGEL QGQAGVH*

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MDQRPPCRFF MQGNCRYGDS CAFSHLITPG PVPGRRVCTY FMQGGCHYGD DCQFEHPGVH  60
RGGRYGGSHQ RGRGRTGLNA SAPVWTPRGY AHANGNRHTY VPEEDDDYAS DEERFLAELE  120
EQKFFEEQRE FLEEAMPDEG IGGQASIPSI PSSELDAAID ALAEDLERTG VAVQKENPHG  180
PPQENGPQAP SAEETAAERQ EEPVEAAGSQ QEAVEAGAEA EAPARSPRPD WPLCVNYFSN  240
GSCPRGNACR FAHGLLCEVC GKHALHPDIP DDAEAHTRAC KAREERLNKQ PAAAELECSI  300
CLEKVLSKEN AGERKFGLLS CEHPFCLACH PGLASPSRLC SCPGHCGTDV PSLPYTVLLR  360
DPELSVAWES SREGDNPGEL QGQAGVH*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	5e-26	C3H family protein