PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bobra.0157s0025.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus
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Family | Whirly | ||||||||
Protein Properties | Length: 241aa MW: 26572.7 Da PI: 10.3628 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 81.4 | 1.3e-25 | 65 | 203 | 2 | 135 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanat.......aerkydWekkqsfalsatevaelvdlaskesceffhdpaakg 84 ++k+ aa++ k++ p ++++dsg +++kr+G+l le+a + +er+y W++kq f+ls+ e+++l+ + ++ +hdp +++ Bobra.0157s0025.1.p 65 LHKGSAAVTFKPIPPIWSDIDSGDFVIKRQGALQLEFASVMpglgnrpGERRYAWQQKQIFTLSPLELGSLLVARDFGMADIYHDPNKGT 154 589*********************************98543333333389*********************9999999************ PP Whirly 85 sneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlr 135 ++eG++rk+l+ + l+d + + lsv+ + f vP+s +e ++ Bobra.0157s0025.1.p 155 GEEGQIRKVLSYKRLADNVNFALRLSVKAD--DKTLVFDVPISPGEHETVK 203 ******************999999999988..556789*******987665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence |
MRGFPNKGTV WQISRGLSCG TLPNKRGYRN TMPARLARSV TLRLYQSGSE LRPTASPKYF 60 TKFCLHKGSA AVTFKPIPPI WSDIDSGDFV IKRQGALQLE FASVMPGLGN RPGERRYAWQ 120 QKQIFTLSPL ELGSLLVARD FGMADIYHDP NKGTGEEGQI RKVLSYKRLA DNVNFALRLS 180 VKADDKTLVF DVPISPGEHE TVKLVGQYLI PYLLGMNMAL GIPSESRPQS ASVVSGFIPL 240 * |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 4e-30 | Whirly family protein |