PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0129s0014.5.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

SBP

Protein Properties

Length: 1116aa MW: 121169 Da PI: 6.216

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0129s0014.5.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	98.9	4.3e-31	14	91	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve C adl+++key+ r+k+Ce++ k +++ +g++qrfCq C+rfh+++ fD +krsCr+rL++hn+rrrk+++ Bobra.0129s0014.5.p 14 RCQVETCCADLTDLKEYYLRYKICEKCQKLRSIIRDGKRQRFCQLCGRFHNIEAFDGDKRSCRTRLQRHNARRRKQKP 91 6**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1116 aa Download sequence
MMPALAARKQ ETLRCQVETC CADLTDLKEY YLRYKICEKC QKLRSIIRDG KRQRFCQLCG 60 RFHNIEAFDG DKRSCRTRLQ RHNARRRKQK PDSTSQGPTG SGTMDVDQPL GADDVASSKK 120 KRVNSRVAAT REMAPEVCRS ASSQLPGAHT FRQPEHIFRQ MQLSQPTPSW PKLEDKAELD 180 CLGGSPCEQG ADVVKASSPG TSRPSASWGQ GSQQDGRGST PGRSSPHSQV SELVSKPSMS 240 SSSPGTHLVP EVGGWPADYT MQLRLPAISK HDWAVSAPSP SMINKPHFMT AEMASMQQPI 300 GGVSAGQKSL DMLDMIHMPD IVEPDSIFPM RLVDMSRSCD DMHPFAPGVS DCGPTEPSWG 360 NEIMPMGTAG NDVSGALPWS WQPQQHIPQV PHTCPVTPVM HPIPGVDIPF PVAPEEFSNP 420 AYATLHTLGS PVDLAYDTSM CPGSTAWAAR PMEHSLPSSS GDVCSELADA HNLLNASFHV 480 NPIEVRARFS AKISHITPDD LPRNLHQQLV DLMPVTMNGV TGYVRPGCVY LTVAFGVDAA 540 DAKTLQASSI LQALDHLMSL PHAEFWRLQT AVVQLYNELV LIRGGQVVRT LDLELSSAVN 600 PCLTKVLPVA VKQGTTSILT LLGRNLDCPD CVIVARSQGQ QRYLQRLEES RGAAPADGNA 660 GDSLRVILPP DLPPGGLQIE VACKAYLTDF QVVLILEKQD VIEEIRQLEI DSTCMDETNS 720 ILLDFDRVIE LLRVSAAVKA GRYVRLPYKP NYAILVKLAQ RLFVIATRKG WPTVARTVLG 780 VACMQAQSIV DVVRSMHTMS HGLSLLHLAV CSGNPKMVEF VLEWTSSAGL ELSAAAPSAG 840 GFTPLHLAAL HNDDGKMAVT LTTLCVDGKD AWKVAGKLLT PFDLAQLAGT ADQIQKRLIE 900 AAREIEEMTA AHDAAVLKDD LLDGSDEEYP STDTDCDSVN SDDPDCLNSR KEMASSGSKH 960 SSSAPQVAEE ECEACCSSLM ARKNCQKELS APRAAVFPEE EPASLKSNRR LIGADYNLLP 1020 SPKKVSHYSV SKSEAEGKKG ALWRGLEKPG VQRPGASHSY GSIQTYQQLL QEADSDEEDF 1080 NSKSSGIFIY ACIPTVNNLH LYGPGNPLQS LLSTI*

Sequence ? help Back to Top

Protein Sequence Length: 1116 aa Download sequence

MMPALAARKQ ETLRCQVETC CADLTDLKEY YLRYKICEKC QKLRSIIRDG KRQRFCQLCG  60
RFHNIEAFDG DKRSCRTRLQ RHNARRRKQK PDSTSQGPTG SGTMDVDQPL GADDVASSKK  120
KRVNSRVAAT REMAPEVCRS ASSQLPGAHT FRQPEHIFRQ MQLSQPTPSW PKLEDKAELD  180
CLGGSPCEQG ADVVKASSPG TSRPSASWGQ GSQQDGRGST PGRSSPHSQV SELVSKPSMS  240
SSSPGTHLVP EVGGWPADYT MQLRLPAISK HDWAVSAPSP SMINKPHFMT AEMASMQQPI  300
GGVSAGQKSL DMLDMIHMPD IVEPDSIFPM RLVDMSRSCD DMHPFAPGVS DCGPTEPSWG  360
NEIMPMGTAG NDVSGALPWS WQPQQHIPQV PHTCPVTPVM HPIPGVDIPF PVAPEEFSNP  420
AYATLHTLGS PVDLAYDTSM CPGSTAWAAR PMEHSLPSSS GDVCSELADA HNLLNASFHV  480
NPIEVRARFS AKISHITPDD LPRNLHQQLV DLMPVTMNGV TGYVRPGCVY LTVAFGVDAA  540
DAKTLQASSI LQALDHLMSL PHAEFWRLQT AVVQLYNELV LIRGGQVVRT LDLELSSAVN  600
PCLTKVLPVA VKQGTTSILT LLGRNLDCPD CVIVARSQGQ QRYLQRLEES RGAAPADGNA  660
GDSLRVILPP DLPPGGLQIE VACKAYLTDF QVVLILEKQD VIEEIRQLEI DSTCMDETNS  720
ILLDFDRVIE LLRVSAAVKA GRYVRLPYKP NYAILVKLAQ RLFVIATRKG WPTVARTVLG  780
VACMQAQSIV DVVRSMHTMS HGLSLLHLAV CSGNPKMVEF VLEWTSSAGL ELSAAAPSAG  840
GFTPLHLAAL HNDDGKMAVT LTTLCVDGKD AWKVAGKLLT PFDLAQLAGT ADQIQKRLIE  900
AAREIEEMTA AHDAAVLKDD LLDGSDEEYP STDTDCDSVN SDDPDCLNSR KEMASSGSKH  960
SSSAPQVAEE ECEACCSSLM ARKNCQKELS APRAAVFPEE EPASLKSNRR LIGADYNLLP  1020
SPKKVSHYSV SKSEAEGKKG ALWRGLEKPG VQRPGASHSY GSIQTYQQLL QEADSDEEDF  1080
NSKSSGIFIY ACIPTVNNLH LYGPGNPLQS LLSTI*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.1	8e-23	SBP family protein