PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0076s0043.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

M-type_MADS

Protein Properties

Length: 797aa MW: 84557.3 Da PI: 7.5976

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0076s0043.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	73.7	1.6e-23	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +i +++nrqvtf+kR+ng++KKA ELSvLC+ e+a++if s+g+l+ yss Bobra.0076s0043.1.p 10 KITDERNRQVTFTKRKNGLMKKAMELSVLCECEIAMVIFNSQGRLFQYSS 59 799*********************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 797 aa Download sequence
MGRKKIRIEK ITDERNRQVT FTKRKNGLMK KAMELSVLCE CEIAMVIFNS QGRLFQYSST 60 DMDAILQRYS RCCHEPHETR NNQDLYKQHF AAAAGDGGKD DDEDDDDDDG HEGCGKRQRV 120 ASDGANAEGG FSVNVQSVPE ENAAFNLYGG DSRSLGQTAG GEVLRSYGLC DDEGRYPLSP 180 KSENAFQHIS RQFDALYQKI KQNESETNGK VVSSNVRTDA RATGSSNHTV QTHSNVGVPI 240 NLLPQGTQVD VRYQMPPNGV TTASGRPGAP RPFDMGHRMP SMGLNVPSGM VPVRNPAGSM 300 PQAGHQPQHA MQQMPGGMQT VQMQGMIPRQ PQAGPSPQVM AHQQQQGPLQ HPTQNQAPTL 360 AVQSMHQLVV PQQYSMGTPS PSAPPHQHYS MAPSNNAQTG GDYRILSGGD QQAVIGNSPS 420 QQQPSGPGVQ QMVSGPTYAS NQAPQAQRLV YGNVLSQQAP QGMYQQQTMG GVPQPGISHH 480 SMASTWTHQG QLLQHPQQAG PPQAMMSMQP SNMHTGQSMV QSQQSSGHTM VQSQQSHSMI 540 PAQQTSGHGM VHPQQGHNYG MGLPQQGSGH MMSPQQAGSH SLVHSMQGGA HVMMAQPGAP 600 QGLVVSPQGV AQGMVSSQQG PNHNMGQSQQ LQGHNMMAPQ QGASQTMGPP RPGTGNSLMP 660 GHMVGSAAGM HGSHMHLQPQ LAHPQQMGGY GTYQQQMGMH QTPPMTSSLH GGSMGNSASS 720 GTPPTVSPPI MAGSMPPGAS PPVVGMPLQV DVGQPLPSPV AGTPTGSQGK VPSFMTPSPA 780 NTTIQPKEEA ITPATQ*

Sequence ? help Back to Top

Protein Sequence Length: 797 aa Download sequence

MGRKKIRIEK ITDERNRQVT FTKRKNGLMK KAMELSVLCE CEIAMVIFNS QGRLFQYSST  60
DMDAILQRYS RCCHEPHETR NNQDLYKQHF AAAAGDGGKD DDEDDDDDDG HEGCGKRQRV  120
ASDGANAEGG FSVNVQSVPE ENAAFNLYGG DSRSLGQTAG GEVLRSYGLC DDEGRYPLSP  180
KSENAFQHIS RQFDALYQKI KQNESETNGK VVSSNVRTDA RATGSSNHTV QTHSNVGVPI  240
NLLPQGTQVD VRYQMPPNGV TTASGRPGAP RPFDMGHRMP SMGLNVPSGM VPVRNPAGSM  300
PQAGHQPQHA MQQMPGGMQT VQMQGMIPRQ PQAGPSPQVM AHQQQQGPLQ HPTQNQAPTL  360
AVQSMHQLVV PQQYSMGTPS PSAPPHQHYS MAPSNNAQTG GDYRILSGGD QQAVIGNSPS  420
QQQPSGPGVQ QMVSGPTYAS NQAPQAQRLV YGNVLSQQAP QGMYQQQTMG GVPQPGISHH  480
SMASTWTHQG QLLQHPQQAG PPQAMMSMQP SNMHTGQSMV QSQQSSGHTM VQSQQSHSMI  540
PAQQTSGHGM VHPQQGHNYG MGLPQQGSGH MMSPQQAGSH SLVHSMQGGA HVMMAQPGAP  600
QGLVVSPQGV AQGMVSSQQG PNHNMGQSQQ LQGHNMMAPQ QGASQTMGPP RPGTGNSLMP  660
GHMVGSAAGM HGSHMHLQPQ LAHPQQMGGY GTYQQQMGMH QTPPMTSSLH GGSMGNSASS  720
GTPPTVSPPI MAGSMPPGAS PPVVGMPLQV DVGQPLPSPV AGTPTGSQGK VPSFMTPSPA  780
NTTIQPKEEA ITPATQ*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.2	2e-24	MIKC_MADS family protein