PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0034s0082.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

AP2

Protein Properties

Length: 424aa MW: 47286.9 Da PI: 10.4129

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0034s0082.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	35.3	2.8e-11	25	72	1	53
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 s y+GV+ +++W+A+I + slg + t+eeAa+a+++ar + Bobra.0034s0082.1.p 25 SIYRGVTLFAPTQKWRAQISFG-----GETTSLGDYATEEEAARAYDKARIHF 72 579*99999***9993.....4********************866 PP
2	AP2	22.6	2.7e-07	117	161	1	50
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 s+y+G + ++g+W A+I + +++lg + t+e+Aa+a+++a+ Bobra.0034s0082.1.p 117 SKYRGASLLQQTGKWHAQINIE-----KDQIHLGFYFTEEGAARAYDRAA 161 78999999999******996.....5******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MEGRSKRPKT ITSQDGTPPK RPRSSIYRGV TLFAPTQKWR AQISFGGETT SLGDYATEEE 60 AARAYDKARI HFKKMDNLNF GVNAYSAEEI VFLQGKLWEE VREWLRQGAR KKPTSSSKYR 120 GASLLQQTGK WHAQINIEKD QIHLGFYFTE EGAARAYDRA AIIKALNDNA RKVSLNFPIK 180 NYEEDLPILC HIPLRKMSED VPNDKKKDLW EMLDNGFHGR MEAGFKPLSP EHVKRIDLLK 240 QNAVVFQPKT VALSCEQASI EGSPAGPKSP LKRSQSPFVS AVGPVPVVVT PSKPIRGLQQ 300 SRAATSPPMS PSPCKKPIPR RTAARHLKFS DGERDTVKDP KKALYDDPET EVTASKAKRV 360 LETPDTPDTS KRGRRPVSEP DAPSPPSSES PSEAPSPPKY EATLRHARRM RRKSLMPCRA 420 PVS*

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MEGRSKRPKT ITSQDGTPPK RPRSSIYRGV TLFAPTQKWR AQISFGGETT SLGDYATEEE  60
AARAYDKARI HFKKMDNLNF GVNAYSAEEI VFLQGKLWEE VREWLRQGAR KKPTSSSKYR  120
GASLLQQTGK WHAQINIEKD QIHLGFYFTE EGAARAYDRA AIIKALNDNA RKVSLNFPIK  180
NYEEDLPILC HIPLRKMSED VPNDKKKDLW EMLDNGFHGR MEAGFKPLSP EHVKRIDLLK  240
QNAVVFQPKT VALSCEQASI EGSPAGPKSP LKRSQSPFVS AVGPVPVVVT PSKPIRGLQQ  300
SRAATSPPMS PSPCKKPIPR RTAARHLKFS DGERDTVKDP KKALYDDPET EVTASKAKRV  360
LETPDTPDTS KRGRRPVSEP DAPSPPSSES PSEAPSPPKY EATLRHARRM RRKSLMPCRA  420
PVS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	5e-17	AP2 family protein