PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bobra.0003s0060.1.p

Organism

Botryococcus braunii

Taxonomic ID

38881

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Elliptochloris clade; Botryococcus

Family

CAMTA

Protein Properties

Length: 448aa MW: 48905.9 Da PI: 8.3215

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bobra.0003s0060.1.p	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	148.7	1.4e-46	38	154	2	117
CG-1 2 lkekkrwlkneeiaaiLenfekheltl..elktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahse 89 ++ ++ wlkn+++++i+ n+++++l+l +++++p+ g++ L+nrk +r+frkDG++w+kk+ gktvrE+hekLKvg+ ++l+cyYahse Bobra.0003s0060.1.p 38 TRARTSWLKNDQVYDIICNYREYNLMLatDPPKKPPGGTVYLFNRKAIRFFRKDGHNWRKKQGGKTVRETHEKLKVGNRDMLTCYYAHSE 127 445999****************9988899******************************************************* PP CG-1 90 enptfqrrcywlLeeelekivlvhylev 117 e++ +qrrcywlLe + ++iv+vhyl++ Bobra.0003s0060.1.p 128 EKHALQRRCYWLLEGD-DSIVFVHYLSS 154 ************.******976 PP

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence
MRPGGICRGR ACCIFEDLMA GPLVPGDGVP KPIRDLLTRA RTSWLKNDQV YDIICNYREY 60 NLMLATDPPK KPPGGTVYLF NRKAIRFFRK DGHNWRKKQG GKTVRETHEK LKVGNRDMLT 120 CYYAHSEEKH ALQRRCYWLL EGDDSIVFVH YLSSSLSHPA VPTYNAYPPP ATDPQGFSGM 180 TDLAQRHSRW RDAEDRVADP LQPIQIGVVV TTPADSFEHD PLPVTNSSDP LGSLDLAISP 240 FSLPGNCIQD GTNSPPLCVK MERAGSENLA RSNSASSARA VLVEGPNRLG YLHQPPVRQG 300 STVQTGETVD LYSGWESGAL SGRVSSAHLD VPFGRMGFES RQPSMNRQSS NGVDVQSNLF 360 GLSGRQDEPH VVVTLSEAPM QPLDDDDAGA GGPQCKHPMS LRHSSSFGRR VPRPGLRSSS 420 GRSTRSSDGS LYGGLVQLSS TPPPTNT*

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence

MRPGGICRGR ACCIFEDLMA GPLVPGDGVP KPIRDLLTRA RTSWLKNDQV YDIICNYREY  60
NLMLATDPPK KPPGGTVYLF NRKAIRFFRK DGHNWRKKQG GKTVRETHEK LKVGNRDMLT  120
CYYAHSEEKH ALQRRCYWLL EGDDSIVFVH YLSSSLSHPA VPTYNAYPPP ATDPQGFSGM  180
TDLAQRHSRW RDAEDRVADP LQPIQIGVVV TTPADSFEHD PLPVTNSSDP LGSLDLAISP  240
FSLPGNCIQD GTNSPPLCVK MERAGSENLA RSNSASSARA VLVEGPNRLG YLHQPPVRQG  300
STVQTGETVD LYSGWESGAL SGRVSSAHLD VPFGRMGFES RQPSMNRQSS NGVDVQSNLF  360
GLSGRQDEPH VVVTLSEAPM QPLDDDDAGA GGPQCKHPMS LRHSSSFGRR VPRPGLRSSS  420
GRSTRSSDGS LYGGLVQLSS TPPPTNT*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	2e-41	CAMTA family protein