PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62044655-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family Trihelix
Protein Properties Length: 275aa    MW: 30812.4 Da    PI: 8.0257
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62044655-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix31.54.6e-10212262144
        trihelix   1 rWtkqevlaLiearremeerlr.......rgklkkplWeevskkmrergfe 44 
                     rW+++evlaLi++r ++ ++ +       ++++k+plWe++s+km e g++
  AUR62044655-RA 212 RWPRDEVLALINIRCSLFNNNGgetphdtETSSKGPLWERISQKMTELGYK 262
                     8*************987776663333333357*****************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MMAQQEELHC KIIRDMVKRD EEKIAKEEAW KRQEFERLEK ELDARAHEQA VSGDRHTKIL  60
GFLNKFSTSS SSFLETQSFK EALEKLNKVP KMTSSNSSIL TQDSICVQLQ PNSSCTTHTP  120
LVNNIPSSSS NENLALDNSK STLPLKSSSL DHQNPNNPLP SHQNEPLKIP SLVSSRKFSS  180
SEHTSTNAAD HITNTKALEN IKSGNKDDTG RRWPRDEVLA LINIRCSLFN NNGGETPHDT  240
ETSSKGPLWE RISQKMTELG YKEVLRDAKK NGRT*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.14e-19Trihelix family protein