PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62044651-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

Trihelix

Protein Properties

Length: 510aa MW: 56336.2 Da PI: 5.935

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62044651-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	43.3	9.8e-14	91	140	36	87
trihelix 36 kkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +km+e g++rs+k+Ckek+en+ k++k++k+g+ ++ + +t+++f+qlea AUR62044651-RA 91 RKMAELGYHRSAKKCKEKFENVYKYHKRTKDGRTGK--ADGKTYRFFEQLEA 140 58******************************96..66678*****85 PP
2	trihelix	108.6	4.1e-34	314	399	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r++++++++++ k+plWee+s++mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a AUR62044651-RA 314 RWPKAEVQALINLRTNLDQKYQENGPKGPLWEEISAAMRKLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 399 8*******************************************************************8.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence
MLGTSSLIGS SGDGGGGSGH ESEGGVGEGV VRPSPDASIM GTGMEDEEKT QSGSGIGIGG 60 GGGSGDLFEN DRSTGGNRWP RQETIALLKI RKMAELGYHR SAKKCKEKFE NVYKYHKRTK 120 DGRTGKADGK TYRFFEQLEA LEQHHLSMAA SSALPPLPQQ PVGQATATPQ RGQSQGPAQA 180 AVPVTMMENP SSPSATQSSS SSTSSDEELM GRRKRKRKWK DFFEKLMKEV IDKQEELQKR 240 FLEAVEKREH DRVAREEAWK LQEMARLNRE HDILQTPPQL QQALVVANTN NGGDNGDFQK 300 STNGENLLQA SSSRWPKAEV QALINLRTNL DQKYQENGPK GPLWEEISAA MRKLGYNRNA 360 KRCKEKWENI NKYFKKVKES NKKRPEDSKT CPYFHQLDAL YRERNKMEIN PATTNATPLT 420 TYGQAQQQPA TTMAPIMAQP EQQWPLQGHQ DQAMEDQGSE NQDESEDDMD DEDDDDQGSG 480 GYEIVANNNV NAGSMTTSTT ATRTAATAE*

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence

MLGTSSLIGS SGDGGGGSGH ESEGGVGEGV VRPSPDASIM GTGMEDEEKT QSGSGIGIGG  60
GGGSGDLFEN DRSTGGNRWP RQETIALLKI RKMAELGYHR SAKKCKEKFE NVYKYHKRTK  120
DGRTGKADGK TYRFFEQLEA LEQHHLSMAA SSALPPLPQQ PVGQATATPQ RGQSQGPAQA  180
AVPVTMMENP SSPSATQSSS SSTSSDEELM GRRKRKRKWK DFFEKLMKEV IDKQEELQKR  240
FLEAVEKREH DRVAREEAWK LQEMARLNRE HDILQTPPQL QQALVVANTN NGGDNGDFQK  300
STNGENLLQA SSSRWPKAEV QALINLRTNL DQKYQENGPK GPLWEEISAA MRKLGYNRNA  360
KRCKEKWENI NKYFKKVKES NKKRPEDSKT CPYFHQLDAL YRERNKMEIN PATTNATPLT  420
TYGQAQQQPA TTMAPIMAQP EQQWPLQGHQ DQAMEDQGSE NQDESEDDMD DEDDDDQGSG  480
GYEIVANNNV NAGSMTTSTT ATRTAATAE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	212	217	RRKRKR
2	212	218	RRKRKRK
3	213	218	RKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	1e-67	Trihelix family protein