PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62043608-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

FAR1

Protein Properties

Length: 532aa MW: 59730.9 Da PI: 7.3182

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62043608-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	21.7	6.5e-07	39	106	21	88
FAR1 21 kskrngeitkrtfvCskegkreeekkktekerrtraetr.tgCkaklkvkkekdgkwevtkleleHnHe 88 + +++++ + + C + g r++++k++ +r++++++r ++C ++ kke +++w+++ + eHnHe AUR62043608-RA 39 TIRKSKRDSNVVLGCDRGGGRRNRHKSEAPKRKRKENSRlINCPFEIIGKKE-EDVWVLKIKNGEHNHE 106 3334444467899*****99999996666655554443899988888.9*************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence
MESVQPNVMC PPPPRTFKDR EELITYVRDF GVSQGYVLTI RKSKRDSNVV LGCDRGGGRR 60 NRHKSEAPKR KRKENSRLIN CPFEIIGKKE EDVWVLKIKN GEHNHEPLKD MSEHRFSHRF 120 NEEEARQVKE MIEAGIKPRQ VLETLKQSNP QLQSTPRHLY NLKTKIREGN FSERSFKSWR 180 PNASAVGASS ENVEQMKVFN LIGGKFVESQ GVVFVDVINP ATQEVVSQVP STTYEEFKAA 240 VFFSKRSFSF MEEYTCFQST AYYDETPRAH TQRQSENAKY EKLALIINTE QGKTIKSAHA 300 DLLHWLEVVE HACEITTVQW GKFFANASNA TDTYSIREPL GVCAGICNSN FSSMVPLWDI 360 VNYVCDDDDI KAISCVGSYK DPGNLGTLLR SALAFKWNGV FLLPGCCDPF NEKALRASRG 420 APFQIPLVSG NWAHLEAFSN EVQVKMFAGH PAISNGFKPV HKLSQRLAHS LADTPLCLLL 480 GSEGTGLTER AREFCELVSI PMADNFESLN VAVAGGILMF MLQSELEDAQ T*

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence

MESVQPNVMC PPPPRTFKDR EELITYVRDF GVSQGYVLTI RKSKRDSNVV LGCDRGGGRR  60
NRHKSEAPKR KRKENSRLIN CPFEIIGKKE EDVWVLKIKN GEHNHEPLKD MSEHRFSHRF  120
NEEEARQVKE MIEAGIKPRQ VLETLKQSNP QLQSTPRHLY NLKTKIREGN FSERSFKSWR  180
PNASAVGASS ENVEQMKVFN LIGGKFVESQ GVVFVDVINP ATQEVVSQVP STTYEEFKAA  240
VFFSKRSFSF MEEYTCFQST AYYDETPRAH TQRQSENAKY EKLALIINTE QGKTIKSAHA  300
DLLHWLEVVE HACEITTVQW GKFFANASNA TDTYSIREPL GVCAGICNSN FSSMVPLWDI  360
VNYVCDDDDI KAISCVGSYK DPGNLGTLLR SALAFKWNGV FLLPGCCDPF NEKALRASRG  420
APFQIPLVSG NWAHLEAFSN EVQVKMFAGH PAISNGFKPV HKLSQRLAHS LADTPLCLLL  480
GSEGTGLTER AREFCELVSI PMADNFESLN VAVAGGILMF MLQSELEDAQ T*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	68	74	PKRKRKE
2	69	99	KRKRKENSRLINCPFEIIGKKEEDVWVLKIK
3	70	100	KRKRKENSRLINCPFEIIGKKEEDVWVLKIK