PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62042833-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

FAR1

Protein Properties

Length: 404aa MW: 45409.7 Da PI: 10.0362

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62042833-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22.6	3.4e-07	25	76	44	88
FAR1 44 ekkk.......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 + + + t++++++gC a++ +++ +gkwe++k+ leH+H+ AUR62042833-RA 25 KVAGkriarelEGEPIATKKSKKCGCGAMVYGSLTCNGKWELKKVCLEHSHT 76 333344444444566679*********************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MPTTLKISKI KRAVTCAGNS NTRRKVAGKR IARELEGEPI ATKKSKKCGC GAMVYGSLTC 60 NGKWELKKVC LEHSHTHSPS KSMIVTEYRL EELEKVSYIR RTLHFGNVVG FPNAKLHRRV 120 FLTWLDAVGG SPPMAILTDQ DSTMRKALEV VMPQTRHGWC LWHITEKFSV KLGKCKGYLD 180 FKEELSDMDE TMHIVIEGLK ELEMKVKEKT TPALPISNVG KTGNRITPPS VNKKKCVGPS 240 RQTPSSVARS VVYEAVGVES DECNPPLIEP NPVSIKDPPR KRGPGCVQSS RFMITVEEDR 300 RRKSGGKNMQ LKRLERSMRE RRLQRKKTLM KVFNLRSLHI PLQTPLSDTV GNDIMDMPSP 360 SFVPPNQFVG VDVDMEGYED DVNATSILPP IFEDDFIRRH GLE*

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MPTTLKISKI KRAVTCAGNS NTRRKVAGKR IARELEGEPI ATKKSKKCGC GAMVYGSLTC  60
NGKWELKKVC LEHSHTHSPS KSMIVTEYRL EELEKVSYIR RTLHFGNVVG FPNAKLHRRV  120
FLTWLDAVGG SPPMAILTDQ DSTMRKALEV VMPQTRHGWC LWHITEKFSV KLGKCKGYLD  180
FKEELSDMDE TMHIVIEGLK ELEMKVKEKT TPALPISNVG KTGNRITPPS VNKKKCVGPS  240
RQTPSSVARS VVYEAVGVES DECNPPLIEP NPVSIKDPPR KRGPGCVQSS RFMITVEEDR  300
RRKSGGKNMQ LKRLERSMRE RRLQRKKTLM KVFNLRSLHI PLQTPLSDTV GNDIMDMPSP  360
SFVPPNQFVG VDVDMEGYED DVNATSILPP IFEDDFIRRH GLE*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-09	FAR1 family protein