PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62042707-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

FAR1

Protein Properties

Length: 519aa MW: 59912.9 Da PI: 6.2997

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62042707-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.9	2.9e-17	139	234	9	90
FAR1 9 evGFsvrkskskkskrngeitkrtfvCskegkreeekkk..............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 evGFs+rk++++++ +++ +t++ +vCs egkr++ kk ++++ r+ + tr +Cka+l+ k+++dgk++v + +l+HnHel AUR62042707-RA 139 EVGFSIRKHTTRYRLHTRIVTEKYYVCSAEGKRHTAAKKtnmvlmvdednkdlEQRKPRQVSITRNNCKASLRAKMNDDGKFKVVSHVLQHNHEL 233 79*******************************99999*******98888899999******************************9 PP FAR1 90 a 90 + AUR62042707-RA 234 T 234 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence
MEERENSNFP DSKLLHQATM EEREIYNFRS TMPETSKASN YENLMREFLQ LQRENRPPLT 60 QHPEKTWSFD LNQTFREGEA ENFVDDFDEF NDDNIQNSKV PEIQIQDIEN KGVSNTLEDE 120 DQVIPNTLDE EGQPVDEDEV GFSIRKHTTR YRLHTRIVTE KYYVCSAEGK RHTAAKKTNM 180 VLMVDEDNKD LEQRKPRQVS ITRNNCKASL RAKMNDDGKF KVVSHVLQHN HELTRKQWHY 240 LHRSEREVTI EKAEVIKTMK SAGLSTMDTY NYMCTEANGE ENLGHSVVDH LNFCSRLRME 300 QIEAGDAQTL VNILIEEQKE DPNFYFRVKF DKEGILSSQR SESTNHAVGF RANKSTTLTE 360 FYRILVRTIK RWRSDEKYNE FTCSKSIAFT SLPLSGMLKH AAQVYTLSLF RDFEEEFGYS 420 MATTVQILGR IEENIILYEV SLEEKPWSSQ QSAQSTNNTA SSSTSTTIPT ILDPKRAVTK 480 GRSKRAKGAL EKGKKSKQKA LPDPNSEFGS KTPTVRIF*

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence

MEERENSNFP DSKLLHQATM EEREIYNFRS TMPETSKASN YENLMREFLQ LQRENRPPLT  60
QHPEKTWSFD LNQTFREGEA ENFVDDFDEF NDDNIQNSKV PEIQIQDIEN KGVSNTLEDE  120
DQVIPNTLDE EGQPVDEDEV GFSIRKHTTR YRLHTRIVTE KYYVCSAEGK RHTAAKKTNM  180
VLMVDEDNKD LEQRKPRQVS ITRNNCKASL RAKMNDDGKF KVVSHVLQHN HELTRKQWHY  240
LHRSEREVTI EKAEVIKTMK SAGLSTMDTY NYMCTEANGE ENLGHSVVDH LNFCSRLRME  300
QIEAGDAQTL VNILIEEQKE DPNFYFRVKF DKEGILSSQR SESTNHAVGF RANKSTTLTE  360
FYRILVRTIK RWRSDEKYNE FTCSKSIAFT SLPLSGMLKH AAQVYTLSLF RDFEEEFGYS  420
MATTVQILGR IEENIILYEV SLEEKPWSSQ QSAQSTNNTA SSSTSTTIPT ILDPKRAVTK  480
GRSKRAKGAL EKGKKSKQKA LPDPNSEFGS KTPTVRIF*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-20	FAR1 family protein