PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62042654-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

SBP

Protein Properties

Length: 708aa MW: 79252 Da PI: 5.9222

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62042654-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	38.4	3.2e-12	144	173	49	78
EEETTT--SS--S-STTTT-------S--- CS SBP 49 fhelsefDeekrsCrrrLakhnerrrkkqa 78 fh ls+fDe+krsCrr+L++hn+rrr+k+a AUR62042654-RA 144 FHVLSDFDEGKRSCRRKLERHNNRRRRKSA 173 9*************************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 708 aa Download sequence
MDLPPLTGGG EESGAPFEWS DLFDFTIDDQ LLLNLDVSDQ PKEQPPVLLP PVTNAEDNGK 60 TVAVNGGESG SSDRVRKRDP RMICENFLAG RVPCACPELD ALMAEEEEEE TGPGKKRPRM 120 GRTPGVAKCQ VPGCEVDIRE LKGFHVLSDF DEGKRSCRRK LERHNNRRRR KSADYRGTVE 180 KEPQGDVQTE DVFSDGEAGK ENAWSSGQIA EKEDSKDKTL SNLCSALESQ NIESDSNLTF 240 TPVDKVIDNL EREYSPPSDT KSAYSSACPT GRISFKLYDW NPAEFPRRLR HQIFQWLASM 300 PVELEGYIRP GCTILTIFVS MPQYMWVKLF EDPVSYVQNS VGHGGILSGR GAALVYLNDL 360 SFRVMREGTS VMKVKVAVRA PKLHYVYPPC FEAGKPMDFV ACGSNLLQPK FRSLVSFAGK 420 YLAHDYYVAF PRGKEDKPAI DYDYQFCRIY VPHTEPSYFG PAFVEVENEC GLSNFIPILI 480 GDEHVCSEIK MIHQKYDCSN CRKKLQCIPS GSSYGTCEVS CSRQAALSEF MLDVAWLLKQ 540 PCSEKLNCIL TRLLKEYIAQ ANDFLRQSAY NKELILKQGG ECVSNVDTCL GSFPHDDLLS 600 VDHTACQVTK LRAETNHTFL EHSDSRGEGE SVSLINREVA MNVNDNRDWP KKSCHNIISK 660 KFTSTRPFIY AIALVAVCFG VCAVVLHPYK VTKFAVTIRR CVFDDSS*

Sequence ? help Back to Top

Protein Sequence Length: 708 aa Download sequence

MDLPPLTGGG EESGAPFEWS DLFDFTIDDQ LLLNLDVSDQ PKEQPPVLLP PVTNAEDNGK  60
TVAVNGGESG SSDRVRKRDP RMICENFLAG RVPCACPELD ALMAEEEEEE TGPGKKRPRM  120
GRTPGVAKCQ VPGCEVDIRE LKGFHVLSDF DEGKRSCRRK LERHNNRRRR KSADYRGTVE  180
KEPQGDVQTE DVFSDGEAGK ENAWSSGQIA EKEDSKDKTL SNLCSALESQ NIESDSNLTF  240
TPVDKVIDNL EREYSPPSDT KSAYSSACPT GRISFKLYDW NPAEFPRRLR HQIFQWLASM  300
PVELEGYIRP GCTILTIFVS MPQYMWVKLF EDPVSYVQNS VGHGGILSGR GAALVYLNDL  360
SFRVMREGTS VMKVKVAVRA PKLHYVYPPC FEAGKPMDFV ACGSNLLQPK FRSLVSFAGK  420
YLAHDYYVAF PRGKEDKPAI DYDYQFCRIY VPHTEPSYFG PAFVEVENEC GLSNFIPILI  480
GDEHVCSEIK MIHQKYDCSN CRKKLQCIPS GSSYGTCEVS CSRQAALSEF MLDVAWLLKQ  540
PCSEKLNCIL TRLLKEYIAQ ANDFLRQSAY NKELILKQGG ECVSNVDTCL GSFPHDDLLS  600
VDHTACQVTK LRAETNHTFL EHSDSRGEGE SVSLINREVA MNVNDNRDWP KKSCHNIISK  660
KFTSTRPFIY AIALVAVCFG VCAVVLHPYK VTKFAVTIRR CVFDDSS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	158	170	RRKLERHNNRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.2	1e-171	SBP family protein