PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62042463-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 394aa MW: 43356.4 Da PI: 8.9156

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62042463-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.5e-06	60	82	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H AUR62042463-RA 60 YVCEICNQGFQRDQNLQMHRRRH 82 9*********************9 PP
2	zf-C2H2	16.9	1.8e-05	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ AUR62042463-RA 137 WVCDKCSKAYAVQSDYKAHLKTC 159 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MLGGSSSSSA PSSEHINMGG SSPADNGNSS KRKRRPAGTP DPDAEVVSLS PKTLLESDRY 60 VCEICNQGFQ RDQNLQMHRR RHKVPWKLLK RENPAVKKRV FVCPEPTCLH HDPCHALGDL 120 VGIKKHFRRK HSNHKQWVCD KCSKAYAVQS DYKAHLKTCG TRGHSCDCGR VFSSPSNDAT 180 NNNNVNVAGP WRNTGLTMKT ATTTMSKPSL SENLHNLELQ LSVSPKATDH ENQSTQLQLS 240 IGSTSDMGEK NATAETNSKS NNKAASASSP SHQTTTLKEQ ASEQLKLAMA EKAYAEDARR 300 EAKRQIELAE REFANAKRIK QQAQAELDKA QTLKDHAMKQ ISATLMQITC HACKQQFHAS 360 PTTTTTATTY ALHLEDQNSS LAESQVEDEN NLQ*

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MLGGSSSSSA PSSEHINMGG SSPADNGNSS KRKRRPAGTP DPDAEVVSLS PKTLLESDRY  60
VCEICNQGFQ RDQNLQMHRR RHKVPWKLLK RENPAVKKRV FVCPEPTCLH HDPCHALGDL  120
VGIKKHFRRK HSNHKQWVCD KCSKAYAVQS DYKAHLKTCG TRGHSCDCGR VFSSPSNDAT  180
NNNNVNVAGP WRNTGLTMKT ATTTMSKPSL SENLHNLELQ LSVSPKATDH ENQSTQLQLS  240
IGSTSDMGEK NATAETNSKS NNKAASASSP SHQTTTLKEQ ASEQLKLAMA EKAYAEDARR  300
EAKRQIELAE REFANAKRIK QQAQAELDKA QTLKDHAMKQ ISATLMQITC HACKQQFHAS  360
PTTTTTATTY ALHLEDQNSS LAESQVEDEN NLQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	31	36	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-124	C2H2 family protein