PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62042430-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 528aa MW: 58577 Da PI: 5.0951

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62042430-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0014	427	449	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC C+k F++ L H+r H AUR62042430-RA 427 HKCLMCDKDFRSGQALGGHMRAH 449 79*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence
MYNNGRKFVC KLCGKGFKSA RAVFGHLRCH SKRKSEAEFE DCSVNEGLLE QELMKQPETP 60 RKKRSGRRYT DKTNCSNSTS WCSLYGSNSA VTDDEELLDI AASLLMLSKG AFYSVDHVSD 120 NNDASVKIEP RLPINSVSXX XXXXXXXAEC AAAVDLGSYV DVLRSGGDSV NENRKEFQGF 180 DCGLSLNQPE NIEHGPVSDV EIQSDMLLYD AGIKDGTIGV LVDGTLFSNS NAITCVPAAE 240 ETKYESVDVS DRMYDESNLR ICGPTNHDHV GSGPSVHNEQ ESVLFDAKIS DDTRGVLEAD 300 TMVDKLSPNC SDPVIEEKKH EDVGVADQTP DKCNSRASES AMENSSSEKC QKHICSICSK 360 SFLSYQSLGG HRLHCQRLCC LESQAHMNAN TSTDITLGEK DGVEDGDNKM KKRWNHDNDK 420 KKRWKKHKCL MCDKDFRSGQ ALGGHMRAHY QSKDQASEAE NVACDKENLA DIEEDRKEEN 480 DAYDDKILAA VRDLRKQEND VCSNKIQLSL KERQMIIVPQ GNIPLMV*

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence

MYNNGRKFVC KLCGKGFKSA RAVFGHLRCH SKRKSEAEFE DCSVNEGLLE QELMKQPETP  60
RKKRSGRRYT DKTNCSNSTS WCSLYGSNSA VTDDEELLDI AASLLMLSKG AFYSVDHVSD  120
NNDASVKIEP RLPINSVSXX XXXXXXXAEC AAAVDLGSYV DVLRSGGDSV NENRKEFQGF  180
DCGLSLNQPE NIEHGPVSDV EIQSDMLLYD AGIKDGTIGV LVDGTLFSNS NAITCVPAAE  240
ETKYESVDVS DRMYDESNLR ICGPTNHDHV GSGPSVHNEQ ESVLFDAKIS DDTRGVLEAD  300
TMVDKLSPNC SDPVIEEKKH EDVGVADQTP DKCNSRASES AMENSSSEKC QKHICSICSK  360
SFLSYQSLGG HRLHCQRLCC LESQAHMNAN TSTDITLGEK DGVEDGDNKM KKRWNHDNDK  420
KKRWKKHKCL MCDKDFRSGQ ALGGHMRAHY QSKDQASEAE NVACDKENLA DIEEDRKEEN  480
DAYDDKILAA VRDLRKQEND VCSNKIQLSL KERQMIIVPQ GNIPLMV*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	3e-11	C2H2 family protein