PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62041889-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

Nin-like

Protein Properties

Length: 593aa MW: 67268.8 Da PI: 6.7601

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62041889-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	29.8	1.2e-09	515	556	3	44
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRW 44 +++ +dl + +++++dAA +Lg++ ++LKr+C +++I+ W AUR62041889-RA 515 CNLTEDDLLPFLKGTLNDAADKLGISESTLKRKCKELNIENW 556 5889999999******************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence
MLTQKLMFKP VPDGIFTPYV SSDPQFPSWV IIDYFSTSNT VEYDEPLGAL GRVDEPTPTV 60 SLPEELAPPF PPLSNFIHQV NDDGSGNAVQ LWLVTKIVKK NVLRSSPRNI PGSWTEDQRF 120 MLDVTEGYLC ESLTRVYSCD RKTNNGSSFN LIDTLIPYKT TSEEVTYLLN RQVSVSAFRL 180 RCPQWAPNMH IYKPHHPKCP KPSGSKGNYI ICGTLAIPVF DPYTNQCVGV YEVVISSAEI 240 DLAVVDIICN LLKDVNLRAD TQFHYQPRQR VLAEIMKVIT KVCEDHDLPL AQTWMPCTCP 300 DRSCNLKQLC MSNAELPFYM RDPSYYPFWK AGAMYHMTEG KAVAGTTFSS KGLCFCRDIT 360 RFPDNFALVP LSRQFKINCS LAVCFGSAYA TNDVYIVQFF WPRTLKHTIE DDDLKVFSIT 420 ASMKQQFDKL SMVSPVYEEL EAETERVSYR TKLIDGEGDE EDFTFLSSTI MARDEHNNEV 480 GTRSNMSIDH EHQSMNHKSD GVKREVTKKA RKKKCNLTED DLLPFLKGTL NDAADKLGIS 540 ESTLKRKCKE LNIENWQDER KNQGISAPVR KRRVSKGCPS WKACDDPTLL RS*

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence

MLTQKLMFKP VPDGIFTPYV SSDPQFPSWV IIDYFSTSNT VEYDEPLGAL GRVDEPTPTV  60
SLPEELAPPF PPLSNFIHQV NDDGSGNAVQ LWLVTKIVKK NVLRSSPRNI PGSWTEDQRF  120
MLDVTEGYLC ESLTRVYSCD RKTNNGSSFN LIDTLIPYKT TSEEVTYLLN RQVSVSAFRL  180
RCPQWAPNMH IYKPHHPKCP KPSGSKGNYI ICGTLAIPVF DPYTNQCVGV YEVVISSAEI  240
DLAVVDIICN LLKDVNLRAD TQFHYQPRQR VLAEIMKVIT KVCEDHDLPL AQTWMPCTCP  300
DRSCNLKQLC MSNAELPFYM RDPSYYPFWK AGAMYHMTEG KAVAGTTFSS KGLCFCRDIT  360
RFPDNFALVP LSRQFKINCS LAVCFGSAYA TNDVYIVQFF WPRTLKHTIE DDDLKVFSIT  420
ASMKQQFDKL SMVSPVYEEL EAETERVSYR TKLIDGEGDE EDFTFLSSTI MARDEHNNEV  480
GTRSNMSIDH EHQSMNHKSD GVKREVTKKA RKKKCNLTED DLLPFLKGTL NDAADKLGIS  540
ESTLKRKCKE LNIENWQDER KNQGISAPVR KRRVSKGCPS WKACDDPTLL RS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-55	Nin-like family protein