PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62041772-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 542aa MW: 59936.4 Da PI: 7.9575

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62041772-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61	2.4e-19	105	151	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde ++++v+++G+ W+ Ia+ ++ gR +kqc++rw+++l AUR62041772-RA 105 KGPWTQEEDETIIELVARYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 151 79****************************.***********97 PP
2	Myb_DNA-binding	54	3.8e-17	157	200	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT +E++ l +a++ +G++ W+ Ia++++ gRt++ +k++w++ AUR62041772-RA 157 KDAWTLDEELALMNAHRIYGNK-WAEIAKYLP-GRTDNAIKNHWNS 200 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence
MAEGDLKAEE CCLENKQSAA ASSSSVSEEE GSASVSLKSS GICSPVATSP SHRRTTGPIR 60 RAKGGWTPEE IFIVFFKHKT EFFPDRSEVQ CLHRWQKVLN PELVKGPWTQ EEDETIIELV 120 ARYGPTKWSV IAKSLPGRIG KQCRERWHNH LNPDIKKDAW TLDEELALMN AHRIYGNKWA 180 EIAKYLPGRT DNAIKNHWNS SLKKKLDFYL ATGKLPPVAK NNLQNNARDI EIPTSNEKLM 240 VGSNKESDSS AQTSSGATDH VPEDTNIKLN MASSLQEMGP SSCPADETAD SDVVERSSYI 300 FSCKNIHSLP LPSPDKCRSV DVIGQNEDAA TPLQPVNPTY GSLYYKPPQY ETCSPSESNL 360 TNSCTQSDCS PAPLTSRTGF FTPPSVKSNG VSVHSPESIL KIAAMTFPNT PSIMRKRKVQ 420 FQTLQTQKNG KYDEASCKDR CLSSIEQRSA IHQSMNQDGS LIPTPPSHSS VVNEFCNGKP 480 FNASPPYRLR TKRTAIIKSV EKQLEFTLDK EKEGDTKSLE LQFRGNSPLR EGISHTKMGV 540 T*

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence

MAEGDLKAEE CCLENKQSAA ASSSSVSEEE GSASVSLKSS GICSPVATSP SHRRTTGPIR  60
RAKGGWTPEE IFIVFFKHKT EFFPDRSEVQ CLHRWQKVLN PELVKGPWTQ EEDETIIELV  120
ARYGPTKWSV IAKSLPGRIG KQCRERWHNH LNPDIKKDAW TLDEELALMN AHRIYGNKWA  180
EIAKYLPGRT DNAIKNHWNS SLKKKLDFYL ATGKLPPVAK NNLQNNARDI EIPTSNEKLM  240
VGSNKESDSS AQTSSGATDH VPEDTNIKLN MASSLQEMGP SSCPADETAD SDVVERSSYI  300
FSCKNIHSLP LPSPDKCRSV DVIGQNEDAA TPLQPVNPTY GSLYYKPPQY ETCSPSESNL  360
TNSCTQSDCS PAPLTSRTGF FTPPSVKSNG VSVHSPESIL KIAAMTFPNT PSIMRKRKVQ  420
FQTLQTQKNG KYDEASCKDR CLSSIEQRSA IHQSMNQDGS LIPTPPSHSS VVNEFCNGKP  480
FNASPPYRLR TKRTAIIKSV EKQLEFTLDK EKEGDTKSLE LQFRGNSPLR EGISHTKMGV  540
T*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-132	MYB family protein