PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62041724-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

CPP

Protein Properties

Length: 580aa MW: 63164.3 Da PI: 8.48

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62041724-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	46.3	8.2e-15	98	137	2	42
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+CnCk+s+Clk+YCeCfa+g +C+ C+C +C+N+ ++ AUR62041724-RA 98 KQKQCNCKNSRCLKLYCECFASGIYCDG-CNCINCHNNVDH 137 89************************.******9875 PP
2	TCR	51.5	2e-16	182	221	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgCnCkks ClkkYCeCf+a+ Cs++CkC dCkN e AUR62041724-RA 182 KHNKGCNCKKSGCLKKYCECFQANILCSDNCKCIDCKNFE 221 589***********************************65 PP

Sequence ? help Back to Top
Protein Sequence Length: 580 aa Download sequence
MERGDMAAVT AATPSSSSSE FAPKKLARQL DFTPNLLAPV QKSPVRQVPV HQSPVQVVQR 60 AVHPASRPPA LAAIVKPDSQ SPQPQATVPE VKDGTPKKQK QCNCKNSRCL KLYCECFASG 120 IYCDGCNCIN CHNNVDHEPA RQEAIGATLE RNPNAFRPKI ASSPHGSRMN KPETGPAQLV 180 GKHNKGCNCK KSGCLKKYCE CFQANILCSD NCKCIDCKNF EGSEERRALF HGSNYNTMIY 240 QAANAAINGA IGSSGPSGYS NSPGSRKRRS QELFIGMYNN QPFYRNAHYM QGNHVKSAPP 300 TLPSEPPATR GTSSQSASKI TYRSPLAGVI QPQDVKELCS LLVIVSKEAA KTFVDKNRNI 360 DYQEKDESRT HGSFEIKEKV NDQKEYKMEK GALQNHSTDE QAVRICPESS GLDESDALNG 420 RPASPGTMAL MCYEQETVLM EESARGPTVD NQNTAPDTSS EQKVTDCFVK QERAVLTNFR 480 DFLNRLITCG SIKETMCSSQ VRDEVGSQGP SLKTDAFNNR HLSNGVIKPF ASMANHTPAT 540 RTGGVAFGST NAFAQHMGLP IENGMLKPKT EKNCIVFLG*

Sequence ? help Back to Top

Protein Sequence Length: 580 aa Download sequence

MERGDMAAVT AATPSSSSSE FAPKKLARQL DFTPNLLAPV QKSPVRQVPV HQSPVQVVQR  60
AVHPASRPPA LAAIVKPDSQ SPQPQATVPE VKDGTPKKQK QCNCKNSRCL KLYCECFASG  120
IYCDGCNCIN CHNNVDHEPA RQEAIGATLE RNPNAFRPKI ASSPHGSRMN KPETGPAQLV  180
GKHNKGCNCK KSGCLKKYCE CFQANILCSD NCKCIDCKNF EGSEERRALF HGSNYNTMIY  240
QAANAAINGA IGSSGPSGYS NSPGSRKRRS QELFIGMYNN QPFYRNAHYM QGNHVKSAPP  300
TLPSEPPATR GTSSQSASKI TYRSPLAGVI QPQDVKELCS LLVIVSKEAA KTFVDKNRNI  360
DYQEKDESRT HGSFEIKEKV NDQKEYKMEK GALQNHSTDE QAVRICPESS GLDESDALNG  420
RPASPGTMAL MCYEQETVLM EESARGPTVD NQNTAPDTSS EQKVTDCFVK QERAVLTNFR  480
DFLNRLITCG SIKETMCSSQ VRDEVGSQGP SLKTDAFNNR HLSNGVIKPF ASMANHTPAT  540
RTGGVAFGST NAFAQHMGLP IENGMLKPKT EKNCIVFLG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	265	270	SRKRRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	1e-129	CPP family protein