PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62041580-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 283aa MW: 32667.5 Da PI: 5.7711

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62041580-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.8	8.8e-17	8	55	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEde+l+ +v+ lG ++W+t+a+ g+ R++k+c++rw++yl AUR62041580-RA 8 KGPWYEEEDERLKTLVAVLGARRWDTVAKISGLSRSGKSCRLRWLNYL 55 79********************************************97 PP
2	Myb_DNA-binding	51.6	2.1e-16	63	106	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + T +E++l++++++++G++ W++Iar+++ gRt++++k++w+++l AUR62041580-RA 63 SITSQEELLILQLHQRWGNK-WAKIARRLP-GRTDNEVKNYWRTHL 106 6799**************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence
MGEENLRKGP WYEEEDERLK TLVAVLGARR WDTVAKISGL SRSGKSCRLR WLNYLRPCLK 60 HGSITSQEEL LILQLHQRWG NKWAKIARRL PGRTDNEVKN YWRTHLRKKM QMQFSLLNHS 120 ISSPTRNVSS SIETSSSSEE RNNYSNRLDM LIQEGNMITP QISSNNTNTK STDENIEAIT 180 SNYYVDCNDK VKGLSDCMNT NLCYTNRLSD CMITSSPYEN RVSDWLNTVS RDVDQTDKYN 240 PGCWEISDGL PDLCLSYPTT WCIEDASAWD FLDTTWDMDL FN*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53200.1	1e-55	MYB family protein