PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62041433-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

Trihelix

Protein Properties

Length: 361aa MW: 42216.9 Da PI: 7.9927

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62041433-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	43.6	7.7e-14	3	49	39	87
trihelix 39 rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +e+g++r+ k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea AUR62041433-RA 3 EEHGYQRTGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 49 69***************************98..55667*****85 PP
2	trihelix	50.2	6.8e-16	257	316	1	59
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnk 59 +W + ev Li++r++me+r+++ g +++ lWe++++km+ g+ rs+ Ckekw++ln+ AUR62041433-RA 257 QWLETEVTRLIQLRTSMESRFQQcGFSEEVLWEDIAAKMAYLGYDRSASVCKEKWDSLNN 316 7*******************967899****************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MSEEHGYQRT GKKCREKFEN LYKYYKKTKE GKAGRQDGKH YRFFRQLEAL YGEHNSQHHH 60 RHPMTSTPDT HHHIAGNMVP HFNTTQETLV PSSKLHRPTT SVSLSNSSDY ETSSSDNEVG 120 GSIESDESKK KKRGKRNWKA KVKEFIDYQM RKIMEKQEAW LEKMMKTLDS RERERMEREE 180 EWRKQEAERM EREHKFWASE RAWIEARDSA LMTALEKLTN SREKEVVSDI DHRNHHHHHR 240 GNEHHCRVGI HDNTHHQWLE TEVTRLIQLR TSMESRFQQC GFSEEVLWED IAAKMAYLGY 300 DRSASVCKEK WDSLNNTVGA GGGVMNDSCL RFFLSDGEGS LGWDSSNYGL KLNQGGNQCA 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MSEEHGYQRT GKKCREKFEN LYKYYKKTKE GKAGRQDGKH YRFFRQLEAL YGEHNSQHHH  60
RHPMTSTPDT HHHIAGNMVP HFNTTQETLV PSSKLHRPTT SVSLSNSSDY ETSSSDNEVG  120
GSIESDESKK KKRGKRNWKA KVKEFIDYQM RKIMEKQEAW LEKMMKTLDS RERERMEREE  180
EWRKQEAERM EREHKFWASE RAWIEARDSA LMTALEKLTN SREKEVVSDI DHRNHHHHHR  240
GNEHHCRVGI HDNTHHQWLE TEVTRLIQLR TSMESRFQQC GFSEEVLWED IAAKMAYLGY  300
DRSASVCKEK WDSLNNTVGA GGGVMNDSCL RFFLSDGEGS LGWDSSNYGL KLNQGGNQCA  360
*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	136	KKKKRGKR
2	129	156	KKKKRGKRNWKAKVKEFIDYQMRKIMEK
3	130	157	KKKKRGKRNWKAKVKEFIDYQMRKIMEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-58	Trihelix family protein