PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62041272-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

FAR1

Protein Properties

Length: 620aa MW: 69408.5 Da PI: 7.9497

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62041272-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	39.1	2.5e-12	114	215	2	90
FAR1 2 fYneYAkevGFsvrkskskks..krngeit.krtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 ++n+Y+k+ F v+ +s ++ k+ +i+ t++C + gk+++++k e +++++++gC+a++ +++++gkwe+ k+ l AUR62041272-RA 114 YFNAYGKQQSFGVVSGQSAYKhfKDGSKIKrAVTWKCDCVGKPDTRRKVggkrisreleGEPIAPKKSKKKCGCEAMVYGRLNSNGKWELRKVCL 208 89**********999877755444444414699******999988888877655555669999********************** PP FAR1 84 eHnHela 90 H+H ++ AUR62041272-RA 209 SHSHLFS 215 **876 PP

Sequence ? help Back to Top
Protein Sequence Length: 620 aa Download sequence
MYNIFQIRSE LGPVAFPSIA FAYRGGVEDS QPERWEISWP PRFDSLIWNG MLPLIKYDGE 60 GAGDSGDSRS IDEARGEGGG EGNGGGDLVD MRFLNVDPPK IGMIFDLWQE IDVYFNAYGK 120 QQSFGVVSGQ SAYKHFKDGS KIKRAVTWKC DCVGKPDTRR KVGGKRISRE LEGEPIAPKK 180 SKKKCGCEAM VYGRLNSNGK WELRKVCLSH SHLFSPSKSM LVTKYRLEEL KKVSYVRCAL 240 HFGNDVGLPN AKLHRWLASQ RNGYENVVFT IKDLNNLRLE DGNSAVFLRG LVTDFKFEEI 300 FRNVYTDSKF IEVQRECMRL MYCTGSSMHE ISPGYFDHLI KDRVYVWVEF EKKEKPINKW 360 RTYYGLYYSE DQRVEFARGV VYEADGVESG PLIQPEPPEP NPVTIKDPHS KRGPGCVQSC 420 QFVTTVKEDR RQKEERRKKY AAKKARDERA RNKAAAKENT DECVVETPQS PHTFTNSIQI 480 TEDTVGNDIM DMPPPSNVPP NQFVGGDVDK EGYEDDEPGC GVAHVNVSFA NDFGSSQYTK 540 WIHIHKKILC PKLVEHGYHG VGLSGGVIAL WDSKSVTCKS MFVGMQGGTI QGTGTIEALD 600 NAGPSSAGSS SVSPTSRRL*

Sequence ? help Back to Top

Protein Sequence Length: 620 aa Download sequence

MYNIFQIRSE LGPVAFPSIA FAYRGGVEDS QPERWEISWP PRFDSLIWNG MLPLIKYDGE  60
GAGDSGDSRS IDEARGEGGG EGNGGGDLVD MRFLNVDPPK IGMIFDLWQE IDVYFNAYGK  120
QQSFGVVSGQ SAYKHFKDGS KIKRAVTWKC DCVGKPDTRR KVGGKRISRE LEGEPIAPKK  180
SKKKCGCEAM VYGRLNSNGK WELRKVCLSH SHLFSPSKSM LVTKYRLEEL KKVSYVRCAL  240
HFGNDVGLPN AKLHRWLASQ RNGYENVVFT IKDLNNLRLE DGNSAVFLRG LVTDFKFEEI  300
FRNVYTDSKF IEVQRECMRL MYCTGSSMHE ISPGYFDHLI KDRVYVWVEF EKKEKPINKW  360
RTYYGLYYSE DQRVEFARGV VYEADGVESG PLIQPEPPEP NPVTIKDPHS KRGPGCVQSC  420
QFVTTVKEDR RQKEERRKKY AAKKARDERA RNKAAAKENT DECVVETPQS PHTFTNSIQI  480
TEDTVGNDIM DMPPPSNVPP NQFVGGDVDK EGYEDDEPGC GVAHVNVSFA NDFGSSQYTK  540
WIHIHKKILC PKLVEHGYHG VGLSGGVIAL WDSKSVTCKS MFVGMQGGTI QGTGTIEALD  600
NAGPSSAGSS SVSPTSRRL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	2e-07	FAR1 family protein