PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62041135-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family ARF
Protein Properties Length: 621aa    MW: 68911.7 Da    PI: 6.7274
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62041135-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.42.4e-22123223198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++ +++a+++       +++    ++l+ +d++g +W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + +
  AUR62041135-RA 123 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHGSEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--RGE 213
                     99****************************964333..4459************************************************..449 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++el+v+v+r
  AUR62041135-RA 214 NGELRVGVRR 223
                     999*****98 PP
2Auxin_resp113.52e-37249331183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aaha++t++ F+v+Y+Pr+s+seF v+v+k+++a ++k+svGmRfkm+fe+++++err+sGt+vgv+d+++++W nS+WrsLk
  AUR62041135-RA 249 AAHAIQTGTLFSVFYKPRTSRSEFLVSVNKYLEAKSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVNDTSSSSWANSEWRSLK 331
                     79*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    
MALQGIHQSA GQAEQDALYK ELWYACAGPL VNVPRQGERV YYFPQGHMEQ LEASTHQGLE  60
QQMPSFNLPS KILCKVAHIE LRAEPETDEV YAQITLVPER DQSEITTPDE PVADPPRCNV  120
HSFCKTLTAS DTSTHGGFSV LRRHADDCLP PLDMSQQPPW QELVATDLHG SEWHFRHIFR  180
GQPRRHLLTT GWSVFVSSKK LVAGDAFIFL RGENGELRVG VRRVMRQLNN MPSSVISSHS  240
MHLGVLATAA HAIQTGTLFS VFYKPRTSRS EFLVSVNKYL EAKSHKLSVG MRFKMRFEGD  300
EVPERRFSGT IVGVNDTSSS SWANSEWRSL KVQWDEPSSI MRPERVSPWE LEPLVANNSS  360
NSQPTQRNKR SRPAVMPSVL FIFILLVLLG IWKSLVESPA AACAEVDRTR DQFSSVTKAG  420
SVGFTANSSL PVLSSHSIYW SHIAENASES LGSVVNKESG EKRKSSGAGC RLFGIQLFDH  480
SNLDETSTRG GEDQPVPSLE AESDRSNVNR PDVPSLSCDP DKTSLNKPSR TCTKVHMQGV  540
AVGRAVDLTR FDCYNDLLNK LEQLEFCSMV RKIFIYTSEE VKRLSPKSKI SVEEEAKPGY  600
TDAEMPAASE EQSSAVGPSC *
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0ARF family protein