PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62041089-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

CO-like

Protein Properties

Length: 363aa MW: 40966.1 Da PI: 4.4325

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62041089-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25.3	3.1e-08	3	43	3	37
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ ++++ + lfCe ++ lC C e+H+ H AUR62041089-RA 3 LEECDYCSKNAAVLFCEADSANLCLLCDREIHSAnslslkH 43 578*****9*******************654555555 PP
2	CCT	44.3	6.3e-16	329	357	16	44
CCT 16 kFeKkirYesRKavAesRpRvKGrFvkqa 44 +++K+irYesRKa+A++R+RvKGrFvk++ AUR62041089-RA 329 RYDKHIRYESRKARADNRQRVKGRFVKAN 357 79*************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MKLEECDYCS KNAAVLFCEA DSANLCLLCD REIHSANSLS LKHLRIPGFG TPDPNSEPKS 60 AIDGLPTAIE LAPIWGISDL VVPCLGDEEK DAVVKQLMTL SKWDLEEREN NSSEFGPDTP 120 SLETGDGSDM LMHNMPFTSL LMKEGSEYAV EDWDGQWGGP MDFEEPSCTS TGVPEDMSEM 180 QCSRNLEGSQ STGVPEDVSE MAEMQSSRNL KGSQSRDDGT NQMMDSEVYL TVDNCSVPVV 240 GASSDAKVIK PEMIDGEHNM QFMEWPYWRK PMNTADVEQL AENRGKAMLR YKEKKKSRRQ 300 LNIINSDYIF LLYFTLIIQC LYWLNLMNRY DKHIRYESRK ARADNRQRVK GRFVKANESP 360 EI*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MKLEECDYCS KNAAVLFCEA DSANLCLLCD REIHSANSLS LKHLRIPGFG TPDPNSEPKS  60
AIDGLPTAIE LAPIWGISDL VVPCLGDEEK DAVVKQLMTL SKWDLEEREN NSSEFGPDTP  120
SLETGDGSDM LMHNMPFTSL LMKEGSEYAV EDWDGQWGGP MDFEEPSCTS TGVPEDMSEM  180
QCSRNLEGSQ STGVPEDVSE MAEMQSSRNL KGSQSRDDGT NQMMDSEVYL TVDNCSVPVV  240
GASSDAKVIK PEMIDGEHNM QFMEWPYWRK PMNTADVEQL AENRGKAMLR YKEKKKSRRQ  300
LNIINSDYIF LLYFTLIIQC LYWLNLMNRY DKHIRYESRK ARADNRQRVK GRFVKANESP  360
EI*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28050.1	4e-17	CO-like family protein