PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62041082-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

FAR1

Protein Properties

Length: 471aa MW: 52244.2 Da PI: 6.1577

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62041082-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	34.2	8.6e-11	133	232	2	90
FAR1 2 fYneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkk.......tekerr....traetrtgCkaklkvkkekdgkwevtkl 81 +Y+eY+k+ GF + +k + ++++ ++ f+C +g+++ ++ + + +r++++++C+ l + +++++w+v ++ AUR62041082-RA 133 YYKEYGKQEGFGAVCVGGRKPkkdgSSSKKVSNYVFRCEAYGTTKYKSVVngkrvavS----HdplvKRKSKKCECHVVLYASVTESSEWRVVNV 223 9********9776554444234466778999********9987745555443....05556************************ PP FAR1 82 eleHnHela 90 + nH++ AUR62041082-RA 224 INSQNHSVE 232 ****976 PP

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence
MEEENVRVKR RLDLNIDLVD KLNLENDVDC CFDDDELDEH DVEGEEEEEG DEVVRDSDED 60 ECLIISGFTD IEGGEEDDCI ITGGNQLEDD CIITGGTQLG ENIGDEDDGG CPSKVEAPAV 120 GMVFTTWEGL HSYYKEYGKQ EGFGAVCVGG RKPKKDGSSS KKVSNYVFRC EAYGTTKYKS 180 VVNGKRVAVS HDPLVKRKSK KCECHVVLYA SVTESSEWRV VNVINSQNHS VEPKDSNHIS 240 MYKKGRINKA VAWRRELITI MVSDPLFLLF TTTWHTKGMD MRILTPVEFE ASWSVVTESY 300 NLPEKGESYT WLEATDARTP VDTPMTQSTP VLTPASTAVQ NSTNPTATTV TPSVQDPVSR 360 ARKKAPSKNQ AKKKSANNQK KKKNQSKGKG KGKRRGISSS SSDDEFDSSS DKKKKSAKKK 420 KRKKKGKRKH SSSSSSSDET DSSTDMQPKV NRDRINSDIA NTDCLVCILW *

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence

MEEENVRVKR RLDLNIDLVD KLNLENDVDC CFDDDELDEH DVEGEEEEEG DEVVRDSDED  60
ECLIISGFTD IEGGEEDDCI ITGGNQLEDD CIITGGTQLG ENIGDEDDGG CPSKVEAPAV  120
GMVFTTWEGL HSYYKEYGKQ EGFGAVCVGG RKPKKDGSSS KKVSNYVFRC EAYGTTKYKS  180
VVNGKRVAVS HDPLVKRKSK KCECHVVLYA SVTESSEWRV VNVINSQNHS VEPKDSNHIS  240
MYKKGRINKA VAWRRELITI MVSDPLFLLF TTTWHTKGMD MRILTPVEFE ASWSVVTESY  300
NLPEKGESYT WLEATDARTP VDTPMTQSTP VLTPASTAVQ NSTNPTATTV TPSVQDPVSR  360
ARKKAPSKNQ AKKKSANNQK KKKNQSKGKG KGKRRGISSS SSDDEFDSSS DKKKKSAKKK  420
KRKKKGKRKH SSSSSSSDET DSSTDMQPKV NRDRINSDIA NTDCLVCILW *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	362	383	RKKAPSKNQAKKKSANNQKKKK
2	380	424	KKKKNQSKGKGKGKRRGISSSSSDDEFDSSSDKKKKSAKKKKRKK
3	393	414	RKKAPSKNQAKKKSANNQKKKK
4	418	423	KKKKRK
5	418	424	KKKKRKK
6	418	425	KKKKRKKK
7	419	425	KKKKRKK
8	420	424	KKRKK
9	420	428	KKRKKKGKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	2e-09	FAR1 family protein