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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62040706-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | LBD | ||||||||
Protein Properties | Length: 149aa MW: 16478 Da PI: 8.3867 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.8 | 6.7e-37 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+ +Cv+apyf ++ ++fa+vhk+FGasnv++ll +lpe+ r++a+ ++ +eA ar+rdPvyG+v+ i++lqq++++l++e+ AUR62040706-RA 7 SCGACKFLRRKCTIECVFAPYFSYDEaVAHFAAVHKVFGASNVSRLLLHLPEHFRSEAALTISFEAIARMRDPVYGCVAYIHALQQEVATLQEEI 101 6***********************9956******************************************************************* PP DUF260 95 allkee 100 ++l+++ AUR62040706-RA 102 EVLGNQ 107 *99887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence |
MTGVSTSCGA CKFLRRKCTI ECVFAPYFSY DEAVAHFAAV HKVFGASNVS RLLLHLPEHF 60 RSEAALTISF EAIARMRDPV YGCVAYIHAL QQEVATLQEE IEVLGNQMVN TMSIGITSDC 120 EGLKPPNHTS SSGRRKVVHR PPQQPWRK* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 2e-45 | LBD family protein |