PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62040261-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family GRAS
Protein Properties Length: 400aa    MW: 45459.9 Da    PI: 5.5485
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62040261-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS259.61.1e-7923952372
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL++cA+a+++ d++ aq++L+ l+++a pdgd++qRl+  f++AL  r ar+  ++   l+  + s       l  l  f++++P+++f++ 
  AUR62040261-RA   2 EQLLVHCAQAIDNTDATPAQQILWVLNNIAPPDGDSNQRLTRAFLRALILRAARTPASCGMNLNIHKFS-------LLDLANFVHLTPWHRFGFT 89 
                     79****************************************************444444444444443.......444455************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvl.... 181
                     +aN+ Ilea+eg + vHi+D+++++++Q p+L++++a+R   ++pp++ +T+ +  ++g    +   +  +g +L +fA++ gv +ef+++    
  AUR62040261-RA  90 AANSVILEAIEGRTVVHIVDLSVTHCMQIPTLIDSIATRYqgRQPPTVTLTVGAFTQQGppmfDFVCYDDLGVKLINFARSKGVVLEFKAVpttp 184
                     ***************************************9666799*****9999888899999999************************9998 PP

            GRAS 182 ...vakrledl..eleeL.....rvkp.........gEalaVnlvlqlhrll.....desvsleserdevLklvkslsPkvvvvveqeadhnses 252
                         a+ l+++  + e++     +  p         +Eal++n++++lh+l      +++  + s r+ + k+++sl P++vvvve+++d +s +
  AUR62040261-RA 185 sdgFASVLDEVrtRQEQMrflygN--PhhhhqeeleEEALIINCQMSLHYLNhvepeEDPSVVMSMRSMFFKALRSLAPTMVVVVEEDVDFTSRN 277
                     888555555552222233223440..25555667889**************85555433333444899*************************** PP

            GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347
                     ++ r+ +a++y++  fd++++ lp  s++r ++E+  + ++i+nv+++eg++r+er+e   +W++r++ea F++v +  +a++++k++l++++  
  AUR62040261-RA 278 LVGRLRSAFNYFWIPFDTVDTFLPWGSKQREWYEAD-ICWKIENVISHEGDQRVERQEPRTRWSQRMMEAEFRAVGFMGEAMTEVKAMLEEHA-T 370
                     ************************************.********************************************************.8 PP

            GRAS 348 gyrveeesgslvlgWkdrpLvsvSa 372
                     g+  ++e++ +vl+Wk++++v+++a
  AUR62040261-RA 371 GWGSKKEEEDIVLTWKGHNVVFATA 395
                     8899999999***********9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    
MEQLLVHCAQ AIDNTDATPA QQILWVLNNI APPDGDSNQR LTRAFLRALI LRAARTPASC  60
GMNLNIHKFS LLDLANFVHL TPWHRFGFTA ANSVILEAIE GRTVVHIVDL SVTHCMQIPT  120
LIDSIATRYQ GRQPPTVTLT VGAFTQQGPP MFDFVCYDDL GVKLINFARS KGVVLEFKAV  180
PTTPSDGFAS VLDEVRTRQE QMRFLYGNPH HHHQEELEEE ALIINCQMSL HYLNHVEPEE  240
DPSVVMSMRS MFFKALRSLA PTMVVVVEED VDFTSRNLVG RLRSAFNYFW IPFDTVDTFL  300
PWGSKQREWY EADICWKIEN VISHEGDQRV ERQEPRTRWS QRMMEAEFRA VGFMGEAMTE  360
VKAMLEEHAT GWGSKKEEED IVLTWKGHNV VFATALVPS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-141GRAS family protein