PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62040017-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family MYB
Protein Properties Length: 333aa    MW: 37293.5 Da    PI: 7.234
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62040017-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.91.5e-101452148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+d+++++G+g         g++R++k+c++rw++yl
   AUR62040017-RA 14 KGPWSPEEDAKLKDYIEKFGTG---------GLKRCGKSCRLRWLNYL 52
                     79********************.........889************97 PP
2Myb_DNA-binding36.21.4e-1159101246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ eEd ++  +    G++ W+ Ia  ++ gRt++++k++w++
   AUR62040017-RA  59 GEFSDEEDRIICSLYDSIGSR-WSIIAGQLP-GRTDNDIKNYWNT 101
                      789******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MGRAPCCDKA NVKKGPWSPE EDAKLKDYIE KFGTGGLKRC GKSCRLRWLN YLRPNIKHGE  60
FSDEEDRIIC SLYDSIGSRW SIIAGQLPGR TDNDIKNYWN TKLKKKLMGN IITNTPNLNI  120
INQKKFTNNN FNPMFQNHHY PSSLSSPSSL LSHGVLPPSS SSYPITMSFS EGCSNVNNNT  180
LILMQNYHQH HHQVVKDNST LLVFGNDETI DRQQQQPASC SSDGSGTITQ ITNQVKLEDN  240
RQNYGGFYSN QVVNHNQEDD QAKVLLMEEQ KPSSATTGVN TGVLWGQNGQ NTTPAGGTTT  300
SLLDNYGLEE IKQLISSNYS FDETKAEEKD MTK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-69MYB family protein