PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62039870-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

ARF

Protein Properties

Length: 696aa MW: 76558.3 Da PI: 6.6935

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62039870-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.1	3.5e-23	120	221	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + + +d +g+ W++++iyr++++r++lt+GW+ Fv+a++L +gD++vF + + AUR62039870-RA 120 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--NILAKDVHGEPWKFRHIYRGTPRRHLLTTGWSTFVNAKKLIAGDSIVFL--RAE 210 89**************************997656666..69999****************************************..448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ AUR62039870-RA 211 NGDLCVGIRRA 221 8999**997 PP
2	Auxin_resp	111.5	8.4e-37	287	370	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++FevvY+Pra+t+eFvvk+ +v++al+++++ GmRfkm fetedss++++ +Gt+++v+ +dp++W++S+Wr+L+ AUR62039870-RA 287 AATYAAKGQPFEVVYYPRAGTPEFVVKAGHVKAALQIRWCSGMRFKMPFETEDSSRISWfMGTISSVQVADPMHWSDSPWRLLQ 370 678899****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 696 aa Download sequence
MITFMDPKEK IKEADNCLDS QLWHACAGGM VQMPPVNAKI YYFVQGHIEH ANGNVDFRSF 60 PRIPSYVLCR VEDIRYLADQ ETDEVYAKIR LNPVTNEVDY SDEDVGVHGA EVQENKPASF 120 AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSADPPVQNI LAKDVHGEPW KFRHIYRGTP 180 RRHLLTTGWS TFVNAKKLIA GDSIVFLRAE NGDLCVGIRR AKRGLGGGLD STSGWNPGST 240 VLNYGAFSAF LREDENRISR NGNGVGLNSG SNASGKGKVK MESVIEAATY AAKGQPFEVV 300 YYPRAGTPEF VVKAGHVKAA LQIRWCSGMR FKMPFETEDS SRISWFMGTI SSVQVADPMH 360 WSDSPWRLLQ VTWDEPDLLQ NVKRVSPWLV ELVSNMPAIH LSPFSPPRKK FRLPHHPDFP 420 MDGQLPVPSF PGNFLGPSNP FGCLPDNSPA GMQGARHAQF GLSLSDLHMS KLQSGLFPGG 480 FPALDPTTTL PNRPSSSLTY QKPGSNENIS CLLTMGNSNQ SIKKSDVTKP HHFVLFGKPI 540 LTEQQMSLSR SGDTVSPVPT GNSSSEGNVD KAGNVSDGSG SGHNQDRSSM EQLPWIKDNR 600 ADMDSELETG HCKVFMESED VGRTLELTLL KSYEELCSRL ANMFCIESSD MLNRVVYRDG 660 AGSSKQLGDE PFSEFAKRAK RLTILMDSSS DNLGA*

Sequence ? help Back to Top

Protein Sequence Length: 696 aa Download sequence

MITFMDPKEK IKEADNCLDS QLWHACAGGM VQMPPVNAKI YYFVQGHIEH ANGNVDFRSF  60
PRIPSYVLCR VEDIRYLADQ ETDEVYAKIR LNPVTNEVDY SDEDVGVHGA EVQENKPASF  120
AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSADPPVQNI LAKDVHGEPW KFRHIYRGTP  180
RRHLLTTGWS TFVNAKKLIA GDSIVFLRAE NGDLCVGIRR AKRGLGGGLD STSGWNPGST  240
VLNYGAFSAF LREDENRISR NGNGVGLNSG SNASGKGKVK MESVIEAATY AAKGQPFEVV  300
YYPRAGTPEF VVKAGHVKAA LQIRWCSGMR FKMPFETEDS SRISWFMGTI SSVQVADPMH  360
WSDSPWRLLQ VTWDEPDLLQ NVKRVSPWLV ELVSNMPAIH LSPFSPPRKK FRLPHHPDFP  420
MDGQLPVPSF PGNFLGPSNP FGCLPDNSPA GMQGARHAQF GLSLSDLHMS KLQSGLFPGG  480
FPALDPTTTL PNRPSSSLTY QKPGSNENIS CLLTMGNSNQ SIKKSDVTKP HHFVLFGKPI  540
LTEQQMSLSR SGDTVSPVPT GNSSSEGNVD KAGNVSDGSG SGHNQDRSSM EQLPWIKDNR  600
ADMDSELETG HCKVFMESED VGRTLELTLL KSYEELCSRL ANMFCIESSD MLNRVVYRDG  660
AGSSKQLGDE PFSEFAKRAK RLTILMDSSS DNLGA*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein