PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62039649-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 974aa MW: 110840 Da PI: 8.6106

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62039649-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.1	2.3e-06	59	82	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lCr+ +r G C +G+ C+F H++ AUR62039649-RA 59 MPLCRDNLR-GNCTRGAFCRFLHSE 82 589999999.*************95 PP
2	zf-CCCH	19.3	2e-06	211	233	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C++f+r G C +G++Ck+ H+ AUR62039649-RA 211 RSPCQHFLR-GKCDFGASCKRWHP 233 689****.********9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 974 aa Download sequence
MEQTVSERPL YQEQHISQLH TQPNGTVSSN GAHLERDPEE RWCPRRISGD QLRHDKVQMP 60 LCRDNLRGNC TRGAFCRFLH SESDEHDRSR FCQNEPEKLG DVSTVGNSQL YRTNEEAGST 120 AKFSSRGRRS PCRRFQSGRC YRGVSCPYLH PEMPSFHNSR VEQQQVDRAV RDPGFDGRNR 180 DNFGRISLEH VEANKENNST IMSFSRECRS RSPCQHFLRG KCDFGASCKR WHPVNTYASS 240 RHDLNTQHQG ITETFNYPGS GERSRDVTLR TSQEHDRENM HNLLRTGAFS RESREKSPCR 300 NYLRGRCYRG SSCLHLHPVT VYDRPRSDSW SAEQRQVVSG TSRSPHFVDG SIATNFRISQ 360 SHDHNNYVNQ PCRDTHAFCE QNKAWLTKDG VQLAGSREEM DVNARKSSSY ERQKTGWLFT 420 KGRCTRGELC RYLHGFHEYA TSTYNWNEKP NAEAARDSGY FGVANQYANT TTAQDPAGFK 480 NYQSSLGESS LKASDGWFDM RRVDGLSCEV SGEKNRSFCN SAKGHENVSL WSRPFKRQRS 540 RSRSPINLQD DFHSRKFSRC DSRIDLYGGR SRNVAQFQYP DRRSYRYEKP VYHVNGQQRT 600 CEETSVNPRS CEHYDSKLIT PQMHEKVVTQ GLQLEQHANG GVGSNTVIVG MKNEADTVKC 660 ALQPSHTNQN EEILAADSVA VDSSEGQLLL LLVVKMLWSW AQHIQEGKDE TVELTPSIKT 720 YCRKKSKKGS LYLVKNLREK SIPVDMEMSA TRNNGLENVL MHDHPVKKKF RIRRKKKGPD 780 ASCEETRKGE VCNDLKLDTP VCSLETSLSN PDIVSVSDIP ADVKMSASNN NNDLQNVLMD 840 EDPSIRLVLQ KNNHLENVPM CDNPVKQQAL PLSLKGVVPN SRRKLLVLDV NGILVDIVVG 900 YSHRYKPDTR VATKAVFKRP FCDEFLQFCF DRFDVGIWSS RTSNLIDCLM GSLIFLAAEL 960 EEGGRLSLGG FQG*

Sequence ? help Back to Top

Protein Sequence Length: 974 aa Download sequence

MEQTVSERPL YQEQHISQLH TQPNGTVSSN GAHLERDPEE RWCPRRISGD QLRHDKVQMP  60
LCRDNLRGNC TRGAFCRFLH SESDEHDRSR FCQNEPEKLG DVSTVGNSQL YRTNEEAGST  120
AKFSSRGRRS PCRRFQSGRC YRGVSCPYLH PEMPSFHNSR VEQQQVDRAV RDPGFDGRNR  180
DNFGRISLEH VEANKENNST IMSFSRECRS RSPCQHFLRG KCDFGASCKR WHPVNTYASS  240
RHDLNTQHQG ITETFNYPGS GERSRDVTLR TSQEHDRENM HNLLRTGAFS RESREKSPCR  300
NYLRGRCYRG SSCLHLHPVT VYDRPRSDSW SAEQRQVVSG TSRSPHFVDG SIATNFRISQ  360
SHDHNNYVNQ PCRDTHAFCE QNKAWLTKDG VQLAGSREEM DVNARKSSSY ERQKTGWLFT  420
KGRCTRGELC RYLHGFHEYA TSTYNWNEKP NAEAARDSGY FGVANQYANT TTAQDPAGFK  480
NYQSSLGESS LKASDGWFDM RRVDGLSCEV SGEKNRSFCN SAKGHENVSL WSRPFKRQRS  540
RSRSPINLQD DFHSRKFSRC DSRIDLYGGR SRNVAQFQYP DRRSYRYEKP VYHVNGQQRT  600
CEETSVNPRS CEHYDSKLIT PQMHEKVVTQ GLQLEQHANG GVGSNTVIVG MKNEADTVKC  660
ALQPSHTNQN EEILAADSVA VDSSEGQLLL LLVVKMLWSW AQHIQEGKDE TVELTPSIKT  720
YCRKKSKKGS LYLVKNLREK SIPVDMEMSA TRNNGLENVL MHDHPVKKKF RIRRKKKGPD  780
ASCEETRKGE VCNDLKLDTP VCSLETSLSN PDIVSVSDIP ADVKMSASNN NNDLQNVLMD  840
EDPSIRLVLQ KNNHLENVPM CDNPVKQQAL PLSLKGVVPN SRRKLLVLDV NGILVDIVVG  900
YSHRYKPDTR VATKAVFKRP FCDEFLQFCF DRFDVGIWSS RTSNLIDCLM GSLIFLAAEL  960
EEGGRLSLGG FQG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	536	541	KRQRSR