PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62039155-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family GRAS
Protein Properties Length: 312aa    MW: 34636.6 Da    PI: 6.8541
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62039155-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS305.71.1e-93529574374
            GRAS  74 sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakf 168
                      ++  +al++f+ + P++kfsh+taNqaI eav+g +rvHiiD+d++qGlQWp L++ LasR+++  s+R+Tg+g+    s+e l +tg+rLa+f
  AUR62039155-RA   5 LKTFHSALQTFNSLAPFVKFSHFTANQAIFEAVHGFDRVHIIDLDVMQGLQWPGLFHILASRAKKVSSVRLTGFGP----SSELLAQTGSRLAQF 95 
                     55677899********************************************************************....99************* PP

            GRAS 169 Aeelgvpfefnvlvak..rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflea 260
                     A++lg+pf+fn++  k  ++++lel++++++ +Ea++V++++  h+l+d  +s       +L+++ +++Pk+v++v q++d  +++sFlerf+e+
  AUR62039155-RA  96 AASLGLPFKFNPVEGKfgDMSELELSRIDFRANEATVVHCMH--HKLYDIIGSNFG----LLRVLSTVKPKLVTMVTQNIDIfETGSFLERFIET 184
                     ************966566999********************9..999966666666....*********************************** PP

            GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                     l+yysa+fd+l ++l+r++  r+ vE++l+g ei+n++ac   +     +  ++W + l+++GF+pv+ls + a+qa+lll++++++gy++ ee+
  AUR62039155-RA 185 LHYYSAMFDALGEGLSRDNVLRHQVEQQLFGSEIRNILACDDVD---GLNVSRRWGDNLSRFGFEPVSLSGSPAAQASLLLEMFPWKGYTLMEEN 276
                     ******************************************99...888899****************************************** PP

            GRAS 356 gslvlgWkdrpLvsvSaWr 374
                     g+l lgWk+ +L+++SaW+
  AUR62039155-RA 277 GCLRLGWKGMSLLTASAWQ 295
                     ******************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
LSSQLKTFHS ALQTFNSLAP FVKFSHFTAN QAIFEAVHGF DRVHIIDLDV MQGLQWPGLF  60
HILASRAKKV SSVRLTGFGP SSELLAQTGS RLAQFAASLG LPFKFNPVEG KFGDMSELEL  120
SRIDFRANEA TVVHCMHHKL YDIIGSNFGL LRVLSTVKPK LVTMVTQNID IFETGSFLER  180
FIETLHYYSA MFDALGEGLS RDNVLRHQVE QQLFGSEIRN ILACDDVDGL NVSRRWGDNL  240
SRFGFEPVSL SGSPAAQASL LLEMFPWKGY TLMEENGCLR LGWKGMSLLT ASAWQPSNYS  300
CVTNNSNIMG N*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-123GRAS family protein