PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62039040-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

Protein Properties

Length: 516aa MW: 58305.7 Da PI: 10.1421

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62039040-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	38.6	1.9e-12	407	492	1	89
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 f+ v+ p +v k+ l +p k +++h + ++++++l+ + W li +k+ +++GWk+F+ +n L+e D++vF l+++ ++ AUR62039040-RA 407 FIAVMQPTSVYKRFFLDIPAKWMQQHL-P-CRNQEVILRV-GKKIWHTSLITHGKK-DASISTGWKKFALDNSLEESDVLVFNLVSQkDK 492 788999***************9993.3.2445787766.789**755554.567899******************9976333 PP

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence
MFKFKRNSSF EVLIFDQGSS CEKESTYFVK KCKHTKSEHE DKKKRTAREA SNTEIIEDGG 60 EEDSAFFVSK KSKKDDEALI SSGGKVNTQA SRKGALNAAA KARGGTRRIL PCRLPIKRKV 120 QSEKKSFRNE TDKELSEISQ RDVITAENRE SSPEKVDSDK LESHSKKSLN KNDAAKEQSQ 180 ISRRELISPE NGENSPTAER SEKLKGQPAE EQPSANHVEN EPMLNSEMDI TTENEERELV 240 VDRAPKPKPQ SEKRPSSNGT PKEPTQILVK DLITPENGKN FPVKGSSNGY NGEAEKESSR 300 RREIVKERSP ISGREVIRPN YKETSSEENR SRKSCGKRHR LKKQEPPSSS KKLSPGHKAK 360 PPRFRSLVSE ERKSVVKEYM SNRRPVTEVE KEDALLRANP KQSEDSFIAV MQPTSVYKRF 420 FLDIPAKWMQ QHLPCRNQEV ILRVGKKIWH TSLITHGKKD ASISTGWKKF ALDNSLEESD 480 VLVFNLVSQK DKASAVMDVD IFRVVEKITP LSVVS*

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence

MFKFKRNSSF EVLIFDQGSS CEKESTYFVK KCKHTKSEHE DKKKRTAREA SNTEIIEDGG  60
EEDSAFFVSK KSKKDDEALI SSGGKVNTQA SRKGALNAAA KARGGTRRIL PCRLPIKRKV  120
QSEKKSFRNE TDKELSEISQ RDVITAENRE SSPEKVDSDK LESHSKKSLN KNDAAKEQSQ  180
ISRRELISPE NGENSPTAER SEKLKGQPAE EQPSANHVEN EPMLNSEMDI TTENEERELV  240
VDRAPKPKPQ SEKRPSSNGT PKEPTQILVK DLITPENGKN FPVKGSSNGY NGEAEKESSR  300
RREIVKERSP ISGREVIRPN YKETSSEENR SRKSCGKRHR LKKQEPPSSS KKLSPGHKAK  360
PPRFRSLVSE ERKSVVKEYM SNRRPVTEVE KEDALLRANP KQSEDSFIAV MQPTSVYKRF  420
FLDIPAKWMQ QHLPCRNQEV ILRVGKKIWH TSLITHGKKD ASISTGWKKF ALDNSLEESD  480
VLVFNLVSQK DKASAVMDVD IFRVVEKITP LSVVS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	42	73	KKKRTAREASNTEIIEDGGEEDSAFFVSKKSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49480.1	4e-15	B3 family protein