PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62038558-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family Whirly
Protein Properties Length: 234aa    MW: 25962.9 Da    PI: 10.1455
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62038558-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly193.92.3e-60591942138
          Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkv 96 
                     vyk+kaa++ +++ p+f ++dsg +++kr+G++++ + ++++erkydW++kq fals+tev++l+ l++++sc+ffhdpa+++sn+G+vrk+l++
  AUR62038558-RA  59 VYKGKAAFSAEPIPPKFCKVDSG-IRVKRQGFIMMSFSPSVGERKYDWQRKQMFALSPTEVGSLIALGPNGSCDFFHDPAMQTSNAGQVRKSLSI 152
                     8********************99.689******************************************************************** PP

          Whirly  97 ePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138
                     +P pdG+G+f++lsvtn+++k+ne+fsvPv+ aefav+r+ +
  AUR62038558-RA 153 KPSPDGTGYFMSLSVTNNITKTNERFSVPVTSAEFAVMRTSF 194
                     ***************************************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MMKLATIFKS RGNVPGQLLK RSNLTQDVFC LHALMGCAGM STVGQKTFTN DRIFAPYYVY  60
KGKAAFSAEP IPPKFCKVDS GIRVKRQGFI MMSFSPSVGE RKYDWQRKQM FALSPTEVGS  120
LIALGPNGSC DFFHDPAMQT SNAGQVRKSL SIKPSPDGTG YFMSLSVTNN ITKTNERFSV  180
PVTSAEFAVM RTSFSFALPH IMGWDRYSSQ PPVFKEENAT KVGLRSMDSE WDR*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.17e-80Whirly family protein