PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62038255-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 289aa MW: 31336.2 Da PI: 8.3927

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62038255-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.1	2.4e-19	22	67	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd+ l ++v+++G+++W++I++ ++ gR++k+c++rw + AUR62038255-RA 22 KGPWSPEEDDALTRLVQKHGPRNWTLISKSIP-GRSGKSCRLRWCNQ 67 79****************************.*********985 PP
2	Myb_DNA-binding	54.1	3.5e-17	76	118	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd+ +++a++++G++ W+tIar + gRt++ +k++w++ AUR62038255-RA 76 AFTPEEDDTIIRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 118 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence
MNTCSSSENN NKMNRKEVDR IKGPWSPEED DALTRLVQKH GPRNWTLISK SIPGRSGKSC 60 RLRWCNQLSP QVEHRAFTPE EDDTIIRAHA RFGNKWATIA RLLSGRTDNA IKNHWNSTLK 120 RKCSAMVSPA PDDFSGDFPP PLKRAMSEGA DVILRNVSGL SLNNNNNNPG SPGSSDASDS 180 GSHVFRPVPI PGPVNIPPPP VISPATDLSL SLPGSDSCEV SNSDHEPMNG SSPIQEMIKK 240 EVRTYMEGIE MNNNGIRIGG FNHGGFCSQA ADGVMRAAMS RIGIGKIE*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	6e-72	MYB family protein